miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5971 3' -54 NC_001806.1 + 77376 0.66 0.954513
Target:  5'- cAGGccAGACgGGCGcGGGCGCGGCGg- -3'
miRNA:   3'- -UCCacUUUGgUUGU-CUCGUGCCGCgu -5'
5971 3' -54 NC_001806.1 + 113728 0.66 0.954513
Target:  5'- uGGuUGAugacuuuacccuGACCGGCccGGAGCugGGCGg- -3'
miRNA:   3'- uCC-ACU------------UUGGUUG--UCUCGugCCGCgu -5'
5971 3' -54 NC_001806.1 + 65916 0.66 0.954513
Target:  5'- gGGGaGGGACgCAagcucACAgGAGCACGGCGa- -3'
miRNA:   3'- -UCCaCUUUG-GU-----UGU-CUCGUGCCGCgu -5'
5971 3' -54 NC_001806.1 + 119554 0.66 0.954112
Target:  5'- cGGG-GgcGCCAugGGGGCggcugacgcagauGCGGUGCu -3'
miRNA:   3'- -UCCaCuuUGGUugUCUCG-------------UGCCGCGu -5'
5971 3' -54 NC_001806.1 + 95641 0.66 0.950391
Target:  5'- cGGUc--GCCAACGGcuuugcGGCGCGcGCGCGc -3'
miRNA:   3'- uCCAcuuUGGUUGUC------UCGUGC-CGCGU- -5'
5971 3' -54 NC_001806.1 + 82722 0.66 0.946027
Target:  5'- cGGUGu--CCGgggucuGCGGGGCGgCGGCGUc -3'
miRNA:   3'- uCCACuuuGGU------UGUCUCGU-GCCGCGu -5'
5971 3' -54 NC_001806.1 + 19096 0.66 0.941418
Target:  5'- uGGGcuUGggGCCGACGGGGUggGG-GCc -3'
miRNA:   3'- -UCC--ACuuUGGUUGUCUCGugCCgCGu -5'
5971 3' -54 NC_001806.1 + 126142 0.66 0.936562
Target:  5'- cGGcGAGGCCGGCGccGAcaCGCGGCGCu -3'
miRNA:   3'- uCCaCUUUGGUUGU--CUc-GUGCCGCGu -5'
5971 3' -54 NC_001806.1 + 67239 0.66 0.936562
Target:  5'- cAGGUGAGGCagguCGGCGGGGUgccGCaGCGCc -3'
miRNA:   3'- -UCCACUUUG----GUUGUCUCG---UGcCGCGu -5'
5971 3' -54 NC_001806.1 + 71698 0.66 0.936562
Target:  5'- cGGGUcucuGGCCAGCAGGGCacauaugaucGCGG-GCAc -3'
miRNA:   3'- -UCCAcu--UUGGUUGUCUCG----------UGCCgCGU- -5'
5971 3' -54 NC_001806.1 + 51248 0.67 0.931456
Target:  5'- cGGGcGucACCAugcagcgcCGGAcGCGCGGCGCGa -3'
miRNA:   3'- -UCCaCuuUGGUu-------GUCU-CGUGCCGCGU- -5'
5971 3' -54 NC_001806.1 + 33281 0.67 0.930931
Target:  5'- cGGG-GAaaacgaaaaaacaGACCAGCGGccGGC-CGGCGCu -3'
miRNA:   3'- -UCCaCU-------------UUGGUUGUC--UCGuGCCGCGu -5'
5971 3' -54 NC_001806.1 + 101015 0.67 0.9261
Target:  5'- cGG-GAGAgCGGCGGccCGCGGCGCu -3'
miRNA:   3'- uCCaCUUUgGUUGUCucGUGCCGCGu -5'
5971 3' -54 NC_001806.1 + 78326 0.67 0.9261
Target:  5'- cGGUccccGAGCUgggAACcGAGCGCGGCGCc -3'
miRNA:   3'- uCCAc---UUUGG---UUGuCUCGUGCCGCGu -5'
5971 3' -54 NC_001806.1 + 25486 0.67 0.925551
Target:  5'- gAGGUaGAGAugcccgaacccccCCGAgGGAGCGCGGgaCGCGc -3'
miRNA:   3'- -UCCA-CUUU-------------GGUUgUCUCGUGCC--GCGU- -5'
5971 3' -54 NC_001806.1 + 90665 0.67 0.920493
Target:  5'- aAGGU--AACCAuagGCGGGGCGgaGGUGCAc -3'
miRNA:   3'- -UCCAcuUUGGU---UGUCUCGUg-CCGCGU- -5'
5971 3' -54 NC_001806.1 + 45331 0.67 0.914637
Target:  5'- cGGGcgcgaUGGGAUCGGgGGcGCGCGGUGCGa -3'
miRNA:   3'- -UCC-----ACUUUGGUUgUCuCGUGCCGCGU- -5'
5971 3' -54 NC_001806.1 + 122358 0.67 0.914637
Target:  5'- cGGUGGcgcGCUGGCGGAaguggcGCACGGcCGCGu -3'
miRNA:   3'- uCCACUu--UGGUUGUCU------CGUGCC-GCGU- -5'
5971 3' -54 NC_001806.1 + 39750 0.67 0.902181
Target:  5'- cAGGUGGGACCuggaAGGGCACGacccuaccCGCGa -3'
miRNA:   3'- -UCCACUUUGGuug-UCUCGUGCc-------GCGU- -5'
5971 3' -54 NC_001806.1 + 3459 0.67 0.902181
Target:  5'- cGGccacGcgGCCGGCcuGGGCGCGGCGCc -3'
miRNA:   3'- uCCa---CuuUGGUUGu-CUCGUGCCGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.