miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5973 5' -59.2 NC_001806.1 + 2029 0.66 0.750792
Target:  5'- -cGGGCccgucggcggGCCAGuCGCaggCGCGCACGGu -3'
miRNA:   3'- uaCUCG----------UGGUC-GCGca-GCGCGUGCUu -5'
5973 5' -59.2 NC_001806.1 + 112073 0.66 0.741113
Target:  5'- -cGGGUAUCGGCGCGcaucgccagUUGCGCGCc-- -3'
miRNA:   3'- uaCUCGUGGUCGCGC---------AGCGCGUGcuu -5'
5973 5' -59.2 NC_001806.1 + 67264 0.66 0.741113
Target:  5'- -cGcAGCGCCAGaagcaGCGUCccaGCACGAu -3'
miRNA:   3'- uaC-UCGUGGUCg----CGCAGcg-CGUGCUu -5'
5973 5' -59.2 NC_001806.1 + 69571 0.66 0.731339
Target:  5'- -aGGGCGCCAGCGagcaCaCGCACGGg -3'
miRNA:   3'- uaCUCGUGGUCGCgca-GcGCGUGCUu -5'
5973 5' -59.2 NC_001806.1 + 6042 0.66 0.731339
Target:  5'- -cGAGCACUGGCGC--CGUGCcCGAc -3'
miRNA:   3'- uaCUCGUGGUCGCGcaGCGCGuGCUu -5'
5973 5' -59.2 NC_001806.1 + 123469 0.66 0.731339
Target:  5'- -gGAGCAagCGGCGCGUCGUgacuuucuaaccGCACa-- -3'
miRNA:   3'- uaCUCGUg-GUCGCGCAGCG------------CGUGcuu -5'
5973 5' -59.2 NC_001806.1 + 25919 0.66 0.72148
Target:  5'- -cGGGCGgC-GUGCG-CGCGCGCGGc -3'
miRNA:   3'- uaCUCGUgGuCGCGCaGCGCGUGCUu -5'
5973 5' -59.2 NC_001806.1 + 22984 0.66 0.72148
Target:  5'- cGUGGcuGCGCgAGCuGCGguUCGUGCGCGAc -3'
miRNA:   3'- -UACU--CGUGgUCG-CGC--AGCGCGUGCUu -5'
5973 5' -59.2 NC_001806.1 + 3609 0.66 0.711543
Target:  5'- -cGGGCACC-GCGCGcUCGCccgGUGCGGc -3'
miRNA:   3'- uaCUCGUGGuCGCGC-AGCG---CGUGCUu -5'
5973 5' -59.2 NC_001806.1 + 15748 0.66 0.70154
Target:  5'- -gGAGCGgUAGCGCGagGUgagGCGCGAu -3'
miRNA:   3'- uaCUCGUgGUCGCGCagCG---CGUGCUu -5'
5973 5' -59.2 NC_001806.1 + 2530 0.67 0.691478
Target:  5'- -cGGGC-CCGGCGCacCGCGCgGCGAu -3'
miRNA:   3'- uaCUCGuGGUCGCGcaGCGCG-UGCUu -5'
5973 5' -59.2 NC_001806.1 + 77385 0.67 0.691478
Target:  5'- -cGGGCGCgGGCGCGgcggcCGCGCccGCGc- -3'
miRNA:   3'- uaCUCGUGgUCGCGCa----GCGCG--UGCuu -5'
5973 5' -59.2 NC_001806.1 + 101761 0.67 0.681367
Target:  5'- -gGAuCGCCAGgGCGUCGUGgGCGu- -3'
miRNA:   3'- uaCUcGUGGUCgCGCAGCGCgUGCuu -5'
5973 5' -59.2 NC_001806.1 + 103054 0.67 0.661031
Target:  5'- -aGGGCGCCuGCGaucUCGUGCACGu- -3'
miRNA:   3'- uaCUCGUGGuCGCgc-AGCGCGUGCuu -5'
5973 5' -59.2 NC_001806.1 + 21966 0.67 0.650825
Target:  5'- -cGGGCAgccCCGGCGgGUCGaGCugGAc -3'
miRNA:   3'- uaCUCGU---GGUCGCgCAGCgCGugCUu -5'
5973 5' -59.2 NC_001806.1 + 81700 0.67 0.650825
Target:  5'- -aGGGCGgCGGUGCGUCcuuuuuuauagGCGCGCGc- -3'
miRNA:   3'- uaCUCGUgGUCGCGCAG-----------CGCGUGCuu -5'
5973 5' -59.2 NC_001806.1 + 147639 0.67 0.650825
Target:  5'- -gGGGCACaCGGCGCG-CGUcCGCGGGg -3'
miRNA:   3'- uaCUCGUG-GUCGCGCaGCGcGUGCUU- -5'
5973 5' -59.2 NC_001806.1 + 108867 0.67 0.650825
Target:  5'- -cGGcCGCCAGCGCGUCGCGaaacaGCc-- -3'
miRNA:   3'- uaCUcGUGGUCGCGCAGCGCg----UGcuu -5'
5973 5' -59.2 NC_001806.1 + 25871 0.67 0.640603
Target:  5'- -cGGGCcccccGCgGGCGCG-CGCGCGCGc- -3'
miRNA:   3'- uaCUCG-----UGgUCGCGCaGCGCGUGCuu -5'
5973 5' -59.2 NC_001806.1 + 127829 0.67 0.640603
Target:  5'- aAUGuGCGCgGugucGCGUGUCGCGCAUGc- -3'
miRNA:   3'- -UACuCGUGgU----CGCGCAGCGCGUGCuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.