miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5978 5' -61.3 NC_001806.1 + 71220 0.66 0.722244
Target:  5'- cGGCgUGuuUCgCgCUUCCGCGUUUCGUCc -3'
miRNA:   3'- -CCG-GCu-AGgGgGAGGGCGCGAAGCAG- -5'
5978 5' -61.3 NC_001806.1 + 57049 0.66 0.712726
Target:  5'- gGGCCGGggCCCCCggCUGCGUgcCGg- -3'
miRNA:   3'- -CCGGCUa-GGGGGagGGCGCGaaGCag -5'
5978 5' -61.3 NC_001806.1 + 1094 0.66 0.712726
Target:  5'- cGCCccucgCCCCCUCCCGCcCcUCGcCc -3'
miRNA:   3'- cCGGcua--GGGGGAGGGCGcGaAGCaG- -5'
5978 5' -61.3 NC_001806.1 + 1060 0.66 0.712726
Target:  5'- cGCCccucgCCCCCUCCCGCcCcUCGcCc -3'
miRNA:   3'- cCGGcua--GGGGGAGGGCGcGaAGCaG- -5'
5978 5' -61.3 NC_001806.1 + 1026 0.66 0.712726
Target:  5'- cGCCccucgCCCCCUCCCGCcCcUCGcCc -3'
miRNA:   3'- cCGGcua--GGGGGAGGGCGcGaAGCaG- -5'
5978 5' -61.3 NC_001806.1 + 942 0.66 0.712726
Target:  5'- cGCCccucgCCCCCUCCCGCcCcUCGcCc -3'
miRNA:   3'- cCGGcua--GGGGGAGGGCGcGaAGCaG- -5'
5978 5' -61.3 NC_001806.1 + 908 0.66 0.712726
Target:  5'- cGCCccucgCCCCCUCCCGCcCcUCGcCc -3'
miRNA:   3'- cCGGcua--GGGGGAGGGCGcGaAGCaG- -5'
5978 5' -61.3 NC_001806.1 + 874 0.66 0.712726
Target:  5'- cGCCccucgCCCCCUCCCGCcCcUCGcCc -3'
miRNA:   3'- cCGGcua--GGGGGAGGGCGcGaAGCaG- -5'
5978 5' -61.3 NC_001806.1 + 840 0.66 0.712726
Target:  5'- cGCCccucgCCCCCUCCCGCcCcUCGcCc -3'
miRNA:   3'- cCGGcua--GGGGGAGGGCGcGaAGCaG- -5'
5978 5' -61.3 NC_001806.1 + 120008 0.66 0.69351
Target:  5'- cGCuCGAggugCCCCUgcgccaCCCGCGCccCGUCc -3'
miRNA:   3'- cCG-GCUa---GGGGGa-----GGGCGCGaaGCAG- -5'
5978 5' -61.3 NC_001806.1 + 19722 0.66 0.683827
Target:  5'- cGGgUGAgCCCCCUCCUcCGCccccgCGUCc -3'
miRNA:   3'- -CCgGCUaGGGGGAGGGcGCGaa---GCAG- -5'
5978 5' -61.3 NC_001806.1 + 118926 0.66 0.683827
Target:  5'- uGCCGGcacacccuggCCUCCUUCCGCGUg-CGUCc -3'
miRNA:   3'- cCGGCUa---------GGGGGAGGGCGCGaaGCAG- -5'
5978 5' -61.3 NC_001806.1 + 1418 0.66 0.674106
Target:  5'- uGGCCGAggCCCagcgaaUCCCGgGCggCGcCg -3'
miRNA:   3'- -CCGGCUagGGGg-----AGGGCgCGaaGCaG- -5'
5978 5' -61.3 NC_001806.1 + 1145 0.66 0.674106
Target:  5'- cGCCccucgCCCCCUCCCGCcCcUCGa- -3'
miRNA:   3'- cCGGcua--GGGGGAGGGCGcGaAGCag -5'
5978 5' -61.3 NC_001806.1 + 993 0.66 0.674106
Target:  5'- cGCCcccgCCCCCUCCCGCcCcUCGcCc -3'
miRNA:   3'- cCGGcua-GGGGGAGGGCGcGaAGCaG- -5'
5978 5' -61.3 NC_001806.1 + 142062 0.67 0.664352
Target:  5'- cGGCCGGUucgcCCCCCgaaCCCGgacggGUUUcCGUCg -3'
miRNA:   3'- -CCGGCUA----GGGGGa--GGGCg----CGAA-GCAG- -5'
5978 5' -61.3 NC_001806.1 + 23105 0.67 0.664352
Target:  5'- cGCCGGggCCCUgggcCCCGCGCUgccgCGg- -3'
miRNA:   3'- cCGGCUagGGGGa---GGGCGCGAa---GCag -5'
5978 5' -61.3 NC_001806.1 + 4961 0.67 0.664352
Target:  5'- gGGCCc--UCCCgUCCCGCcggGCgUCGUCg -3'
miRNA:   3'- -CCGGcuaGGGGgAGGGCG---CGaAGCAG- -5'
5978 5' -61.3 NC_001806.1 + 147550 0.67 0.654575
Target:  5'- cGGCC---CCCCCgagCCgCGCGCcacCGUCg -3'
miRNA:   3'- -CCGGcuaGGGGGa--GG-GCGCGaa-GCAG- -5'
5978 5' -61.3 NC_001806.1 + 44099 0.67 0.654575
Target:  5'- -aCCGGUagaaccaaaaCCCCCggUCCCGCGCU-CGcUCg -3'
miRNA:   3'- ccGGCUA----------GGGGG--AGGGCGCGAaGC-AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.