miRNA display CGI


Results 1 - 20 of 39 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5981 5' -51.7 NC_001806.1 + 107391 0.66 0.986056
Target:  5'- gGGAAcgcGCCCGCCGGa--GCCUUc--- -3'
miRNA:   3'- gUCUU---UGGGUGGCCaggCGGAAaaaa -5'
5981 5' -51.7 NC_001806.1 + 133000 0.66 0.986056
Target:  5'- uCAG-AGCCCuggGCCGGggCCGUCUUg--- -3'
miRNA:   3'- -GUCuUUGGG---UGGCCa-GGCGGAAaaaa -5'
5981 5' -51.7 NC_001806.1 + 123017 0.66 0.985882
Target:  5'- -uGAGGCCCGCCGacgccucGUCCGCg------ -3'
miRNA:   3'- guCUUUGGGUGGC-------CAGGCGgaaaaaa -5'
5981 5' -51.7 NC_001806.1 + 88362 0.66 0.984246
Target:  5'- -cGAAGgCCAUCGGggCCGCCg----- -3'
miRNA:   3'- guCUUUgGGUGGCCa-GGCGGaaaaaa -5'
5981 5' -51.7 NC_001806.1 + 21048 0.66 0.984246
Target:  5'- aGGuGACCUACCGugcuacGUCCGCCg----- -3'
miRNA:   3'- gUCuUUGGGUGGC------CAGGCGGaaaaaa -5'
5981 5' -51.7 NC_001806.1 + 73244 0.66 0.984056
Target:  5'- -cGAGGCCCACCcaaacguGG-CCGCCa----- -3'
miRNA:   3'- guCUUUGGGUGG-------CCaGGCGGaaaaaa -5'
5981 5' -51.7 NC_001806.1 + 147910 0.66 0.982263
Target:  5'- aGGggGCCCGuCCGGccccucggCCGCCc----- -3'
miRNA:   3'- gUCuuUGGGU-GGCCa-------GGCGGaaaaaa -5'
5981 5' -51.7 NC_001806.1 + 71270 0.66 0.982263
Target:  5'- cCAGGGACCUGgaGGUCCGCg------ -3'
miRNA:   3'- -GUCUUUGGGUggCCAGGCGgaaaaaa -5'
5981 5' -51.7 NC_001806.1 + 72645 0.66 0.980098
Target:  5'- cCGGggGaCgGCCGGUCCGUCg----- -3'
miRNA:   3'- -GUCuuUgGgUGGCCAGGCGGaaaaaa -5'
5981 5' -51.7 NC_001806.1 + 28137 0.66 0.980098
Target:  5'- cCGGAGcgaguACCCGCCGGccugagggCCGCCc----- -3'
miRNA:   3'- -GUCUU-----UGGGUGGCCa-------GGCGGaaaaaa -5'
5981 5' -51.7 NC_001806.1 + 21587 0.66 0.977743
Target:  5'- ----cGCCCGCCGGcccagCCGCCg----- -3'
miRNA:   3'- gucuuUGGGUGGCCa----GGCGGaaaaaa -5'
5981 5' -51.7 NC_001806.1 + 85737 0.66 0.977743
Target:  5'- --cGAACCCugCGGUCCggaGCCg----- -3'
miRNA:   3'- gucUUUGGGugGCCAGG---CGGaaaaaa -5'
5981 5' -51.7 NC_001806.1 + 22924 0.67 0.975188
Target:  5'- gAGGGACCCGCgGGccCCGCUUc---- -3'
miRNA:   3'- gUCUUUGGGUGgCCa-GGCGGAaaaaa -5'
5981 5' -51.7 NC_001806.1 + 83387 0.67 0.972425
Target:  5'- uGGAccGGCCCuguCUGGUCUGCCg----- -3'
miRNA:   3'- gUCU--UUGGGu--GGCCAGGCGGaaaaaa -5'
5981 5' -51.7 NC_001806.1 + 51040 0.67 0.966246
Target:  5'- --uGGGCCCGCgGGUCCGCgUg---- -3'
miRNA:   3'- gucUUUGGGUGgCCAGGCGgAaaaaa -5'
5981 5' -51.7 NC_001806.1 + 23795 0.67 0.966246
Target:  5'- -cGggG-CCGCCGGgggCCGCCUcUUUg -3'
miRNA:   3'- guCuuUgGGUGGCCa--GGCGGAaAAAa -5'
5981 5' -51.7 NC_001806.1 + 26651 0.67 0.966246
Target:  5'- cCAGAGgcccgGCCCACCGccgCCGCCc----- -3'
miRNA:   3'- -GUCUU-----UGGGUGGCca-GGCGGaaaaaa -5'
5981 5' -51.7 NC_001806.1 + 3324 0.67 0.962816
Target:  5'- -cGggGCCCGCgGGUCCcuccgGCCg----- -3'
miRNA:   3'- guCuuUGGGUGgCCAGG-----CGGaaaaaa -5'
5981 5' -51.7 NC_001806.1 + 47995 0.68 0.959151
Target:  5'- -cGAGGCCCGCCGG-CUGCg------ -3'
miRNA:   3'- guCUUUGGGUGGCCaGGCGgaaaaaa -5'
5981 5' -51.7 NC_001806.1 + 46846 0.68 0.959151
Target:  5'- aCAGccGCCC-UCGGUUCGCCUUc--- -3'
miRNA:   3'- -GUCuuUGGGuGGCCAGGCGGAAaaaa -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.