miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5983 5' -57.2 NC_001806.1 + 105872 0.76 0.281253
Target:  5'- uGGCCUGGGcauggaccGCAUGUACUgGCGCGACa -3'
miRNA:   3'- cUUGGACCC--------CGUACGUGGaCGCGUUG- -5'
5983 5' -57.2 NC_001806.1 + 72512 0.75 0.31624
Target:  5'- cGGGCCUGGGGgA-GC-CCUGCGuCGGCg -3'
miRNA:   3'- -CUUGGACCCCgUaCGuGGACGC-GUUG- -5'
5983 5' -57.2 NC_001806.1 + 140665 0.75 0.346522
Target:  5'- -cAUCUGGaGGCuuuUGUugCUGCGCGGCg -3'
miRNA:   3'- cuUGGACC-CCGu--ACGugGACGCGUUG- -5'
5983 5' -57.2 NC_001806.1 + 130789 0.74 0.354411
Target:  5'- --gUCUGGGaGCuguUGUGCCUGUGCAGCa -3'
miRNA:   3'- cuuGGACCC-CGu--ACGUGGACGCGUUG- -5'
5983 5' -57.2 NC_001806.1 + 109539 0.74 0.387211
Target:  5'- gGAGCCgGGGGagGUGCGCCUGgGCcagGGCg -3'
miRNA:   3'- -CUUGGaCCCCg-UACGUGGACgCG---UUG- -5'
5983 5' -57.2 NC_001806.1 + 89514 0.73 0.404344
Target:  5'- cGGAUCcgGGcGGCGaGCugCUGCGCGGCg -3'
miRNA:   3'- -CUUGGa-CC-CCGUaCGugGACGCGUUG- -5'
5983 5' -57.2 NC_001806.1 + 95546 0.73 0.413088
Target:  5'- cAGCCUGGGGCGcUGCGuCCgcgaGCAGCg -3'
miRNA:   3'- cUUGGACCCCGU-ACGU-GGacg-CGUUG- -5'
5983 5' -57.2 NC_001806.1 + 93337 0.73 0.430921
Target:  5'- aAGCCUGGGGCcccGCACCca-GCAGCu -3'
miRNA:   3'- cUUGGACCCCGua-CGUGGacgCGUUG- -5'
5983 5' -57.2 NC_001806.1 + 151045 0.72 0.47739
Target:  5'- cGGACgUGGGGCGagaagcGCACCcGCGCGGg -3'
miRNA:   3'- -CUUGgACCCCGUa-----CGUGGaCGCGUUg -5'
5983 5' -57.2 NC_001806.1 + 92931 0.72 0.47739
Target:  5'- cGGGCCUGGaGGCcgGgGCCcGCGCGc- -3'
miRNA:   3'- -CUUGGACC-CCGuaCgUGGaCGCGUug -5'
5983 5' -57.2 NC_001806.1 + 111197 0.72 0.486982
Target:  5'- cGGGcCCUGGGGaua--GCCUGCGCGGCc -3'
miRNA:   3'- -CUU-GGACCCCguacgUGGACGCGUUG- -5'
5983 5' -57.2 NC_001806.1 + 76145 0.71 0.536198
Target:  5'- aGACUuggGGGGCGUGCcggcCCUGCGCcaguACg -3'
miRNA:   3'- cUUGGa--CCCCGUACGu---GGACGCGu---UG- -5'
5983 5' -57.2 NC_001806.1 + 136361 0.7 0.576774
Target:  5'- aAACCcGGGGCcgGCGCgCUcCGCGGCc -3'
miRNA:   3'- cUUGGaCCCCGuaCGUG-GAcGCGUUG- -5'
5983 5' -57.2 NC_001806.1 + 2758 0.7 0.59733
Target:  5'- cGGCCacGGGGCGcggGCggGCCUGCGCcGCg -3'
miRNA:   3'- cUUGGa-CCCCGUa--CG--UGGACGCGuUG- -5'
5983 5' -57.2 NC_001806.1 + 23015 0.7 0.60765
Target:  5'- -cGCgCUGGuGCucAUGCGCCUGCGCGGg -3'
miRNA:   3'- cuUG-GACCcCG--UACGUGGACGCGUUg -5'
5983 5' -57.2 NC_001806.1 + 26801 0.69 0.638694
Target:  5'- -cACCUGGcGCGccUGCGCCUGCGacGCg -3'
miRNA:   3'- cuUGGACCcCGU--ACGUGGACGCguUG- -5'
5983 5' -57.2 NC_001806.1 + 97590 0.69 0.649042
Target:  5'- uGGACCUGGGGgAcUGCAUCgGCaaggacgcccGCGACg -3'
miRNA:   3'- -CUUGGACCCCgU-ACGUGGaCG----------CGUUG- -5'
5983 5' -57.2 NC_001806.1 + 82055 0.69 0.649042
Target:  5'- cGAGCUgcacgcGGGGCAUGCGCacaaaGCAGCu -3'
miRNA:   3'- -CUUGGa-----CCCCGUACGUGgacg-CGUUG- -5'
5983 5' -57.2 NC_001806.1 + 73702 0.69 0.659376
Target:  5'- cGGACCUGGaGC-UGCAgCUucGCGCGGCc -3'
miRNA:   3'- -CUUGGACCcCGuACGUgGA--CGCGUUG- -5'
5983 5' -57.2 NC_001806.1 + 2512 0.69 0.669688
Target:  5'- cGGCCUgggcggcgGGGGCGggcccggcGCACC-GCGCGGCg -3'
miRNA:   3'- cUUGGA--------CCCCGUa-------CGUGGaCGCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.