miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5983 5' -57.2 NC_001806.1 + 23946 0.68 0.69021
Target:  5'- gGGGCCUGGGGgGgccGCcggagugguccGCCgaGCGCGGCg -3'
miRNA:   3'- -CUUGGACCCCgUa--CG-----------UGGa-CGCGUUG- -5'
5983 5' -57.2 NC_001806.1 + 128311 0.68 0.694293
Target:  5'- uGggUC-GGGGCcagcuccaucaggccGUGCACCUGaCGCAGa -3'
miRNA:   3'- -CuuGGaCCCCG---------------UACGUGGAC-GCGUUg -5'
5983 5' -57.2 NC_001806.1 + 107946 0.68 0.699384
Target:  5'- cGACCUGGGGCucguggGgGCCguguuuaUGCGCuACa -3'
miRNA:   3'- cUUGGACCCCGua----CgUGG-------ACGCGuUG- -5'
5983 5' -57.2 NC_001806.1 + 22570 0.68 0.700401
Target:  5'- gGGGCCgcgGGGaGCcccgGCGCCgGCGCAGa -3'
miRNA:   3'- -CUUGGa--CCC-CGua--CGUGGaCGCGUUg -5'
5983 5' -57.2 NC_001806.1 + 25917 0.68 0.710533
Target:  5'- --uCCgGGcGGCGUGCGCgC-GCGCGGCg -3'
miRNA:   3'- cuuGGaCC-CCGUACGUG-GaCGCGUUG- -5'
5983 5' -57.2 NC_001806.1 + 115031 0.68 0.729589
Target:  5'- --uCCUGGacaacgcGGCAgccgUGUACCUGCGgAACg -3'
miRNA:   3'- cuuGGACC-------CCGU----ACGUGGACGCgUUG- -5'
5983 5' -57.2 NC_001806.1 + 32203 0.68 0.737523
Target:  5'- gGGACgUGGGGUugGUgugcaaaggcacgcGCACCcGCGCGGCc -3'
miRNA:   3'- -CUUGgACCCCG--UA--------------CGUGGaCGCGUUG- -5'
5983 5' -57.2 NC_001806.1 + 113141 0.68 0.740483
Target:  5'- -cGCCUgGGGGCA-GCGCCUG-GCccACg -3'
miRNA:   3'- cuUGGA-CCCCGUaCGUGGACgCGu-UG- -5'
5983 5' -57.2 NC_001806.1 + 3471 0.67 0.759982
Target:  5'- cGGCCUGGGcGCG-GCGCCcgGCGUc-- -3'
miRNA:   3'- cUUGGACCC-CGUaCGUGGa-CGCGuug -5'
5983 5' -57.2 NC_001806.1 + 25006 0.67 0.759982
Target:  5'- cGGGCCgggacGGGGCGggGCGCUUGUGaGACc -3'
miRNA:   3'- -CUUGGa----CCCCGUa-CGUGGACGCgUUG- -5'
5983 5' -57.2 NC_001806.1 + 116962 0.67 0.76861
Target:  5'- --cCCUGGcucccgugguucgGGUGUGCACCUuugacgGCGCGGCc -3'
miRNA:   3'- cuuGGACC-------------CCGUACGUGGA------CGCGUUG- -5'
5983 5' -57.2 NC_001806.1 + 4017 0.67 0.769563
Target:  5'- cAGCCgcgugaucaGGGCGUaCugCUGCGCGGCg -3'
miRNA:   3'- cUUGGac-------CCCGUAcGugGACGCGUUG- -5'
5983 5' -57.2 NC_001806.1 + 62838 0.67 0.769563
Target:  5'- -cGCCgaGGcGGCGguggGCAUCaGCGCGACa -3'
miRNA:   3'- cuUGGa-CC-CCGUa---CGUGGaCGCGUUG- -5'
5983 5' -57.2 NC_001806.1 + 22076 0.67 0.769563
Target:  5'- -cGCCcccGGGGCggGUGCuguacggcgGCCUGgGCGACa -3'
miRNA:   3'- cuUGGa--CCCCG--UACG---------UGGACgCGUUG- -5'
5983 5' -57.2 NC_001806.1 + 4453 0.67 0.788338
Target:  5'- -cGCCcgGGGGCugccgGCGCC-GCGCucGACg -3'
miRNA:   3'- cuUGGa-CCCCGua---CGUGGaCGCG--UUG- -5'
5983 5' -57.2 NC_001806.1 + 19486 0.67 0.788338
Target:  5'- uGAGag-GGGGCGggaaggGCGCUUGCGCuuGCg -3'
miRNA:   3'- -CUUggaCCCCGUa-----CGUGGACGCGu-UG- -5'
5983 5' -57.2 NC_001806.1 + 95901 0.67 0.788338
Target:  5'- aGAACgUGGGGCuccugccGCACCUGaaggaGgAGCu -3'
miRNA:   3'- -CUUGgACCCCGua-----CGUGGACg----CgUUG- -5'
5983 5' -57.2 NC_001806.1 + 132333 0.66 0.805643
Target:  5'- gGGACCUGGucgaGGUGUGCgagguggGCCUGCGgCcACg -3'
miRNA:   3'- -CUUGGACC----CCGUACG-------UGGACGC-GuUG- -5'
5983 5' -57.2 NC_001806.1 + 27250 0.66 0.815401
Target:  5'- cGGGCCgccucgGGGGCGggacugGCcaaucggcggccGCCaGCGCGGCg -3'
miRNA:   3'- -CUUGGa-----CCCCGUa-----CG------------UGGaCGCGUUG- -5'
5983 5' -57.2 NC_001806.1 + 13134 0.66 0.824092
Target:  5'- aGGCCUGGGGgGagagGCagGCUgacggggggaUGCGCAGCg -3'
miRNA:   3'- cUUGGACCCCgUa---CG--UGG----------ACGCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.