Results 21 - 40 of 53 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5983 | 5' | -57.2 | NC_001806.1 | + | 65469 | 0.66 | 0.832605 |
Target: 5'- cGGGuCCUGGGG---GCGCCcGCGCAccACg -3' miRNA: 3'- -CUU-GGACCCCguaCGUGGaCGCGU--UG- -5' |
|||||||
5983 | 5' | -57.2 | NC_001806.1 | + | 71818 | 0.66 | 0.824092 |
Target: 5'- gGAGCCgggGGGGUcgGUAUC-GUGCAuGCg -3' miRNA: 3'- -CUUGGa--CCCCGuaCGUGGaCGCGU-UG- -5' |
|||||||
5983 | 5' | -57.2 | NC_001806.1 | + | 72512 | 0.75 | 0.31624 |
Target: 5'- cGGGCCUGGGGgA-GC-CCUGCGuCGGCg -3' miRNA: 3'- -CUUGGACCCCgUaCGuGGACGC-GUUG- -5' |
|||||||
5983 | 5' | -57.2 | NC_001806.1 | + | 73702 | 0.69 | 0.659376 |
Target: 5'- cGGACCUGGaGC-UGCAgCUucGCGCGGCc -3' miRNA: 3'- -CUUGGACCcCGuACGUgGA--CGCGUUG- -5' |
|||||||
5983 | 5' | -57.2 | NC_001806.1 | + | 76145 | 0.71 | 0.536198 |
Target: 5'- aGACUuggGGGGCGUGCcggcCCUGCGCcaguACg -3' miRNA: 3'- cUUGGa--CCCCGUACGu---GGACGCGu---UG- -5' |
|||||||
5983 | 5' | -57.2 | NC_001806.1 | + | 77498 | 0.66 | 0.840931 |
Target: 5'- -cGCCgccGGGGCGaggcGUACCUGCGagugAGCg -3' miRNA: 3'- cuUGGa--CCCCGUa---CGUGGACGCg---UUG- -5' |
|||||||
5983 | 5' | -57.2 | NC_001806.1 | + | 78668 | 0.66 | 0.832605 |
Target: 5'- uGGugCUGGcGGCAgUGCuCCUGgGCGc- -3' miRNA: 3'- -CUugGACC-CCGU-ACGuGGACgCGUug -5' |
|||||||
5983 | 5' | -57.2 | NC_001806.1 | + | 82055 | 0.69 | 0.649042 |
Target: 5'- cGAGCUgcacgcGGGGCAUGCGCacaaaGCAGCu -3' miRNA: 3'- -CUUGGa-----CCCCGUACGUGgacg-CGUUG- -5' |
|||||||
5983 | 5' | -57.2 | NC_001806.1 | + | 83488 | 0.66 | 0.832605 |
Target: 5'- -uGCCUGGGG---GCGCCccacUGCGCcGCu -3' miRNA: 3'- cuUGGACCCCguaCGUGG----ACGCGuUG- -5' |
|||||||
5983 | 5' | -57.2 | NC_001806.1 | + | 89101 | 0.66 | 0.840931 |
Target: 5'- --uCCgggGGGGCAUccucguccaGCACCcGCGgGGCg -3' miRNA: 3'- cuuGGa--CCCCGUA---------CGUGGaCGCgUUG- -5' |
|||||||
5983 | 5' | -57.2 | NC_001806.1 | + | 89514 | 0.73 | 0.404344 |
Target: 5'- cGGAUCcgGGcGGCGaGCugCUGCGCGGCg -3' miRNA: 3'- -CUUGGa-CC-CCGUaCGugGACGCGUUG- -5' |
|||||||
5983 | 5' | -57.2 | NC_001806.1 | + | 92931 | 0.72 | 0.47739 |
Target: 5'- cGGGCCUGGaGGCcgGgGCCcGCGCGc- -3' miRNA: 3'- -CUUGGACC-CCGuaCgUGGaCGCGUug -5' |
|||||||
5983 | 5' | -57.2 | NC_001806.1 | + | 93337 | 0.73 | 0.430921 |
Target: 5'- aAGCCUGGGGCcccGCACCca-GCAGCu -3' miRNA: 3'- cUUGGACCCCGua-CGUGGacgCGUUG- -5' |
|||||||
5983 | 5' | -57.2 | NC_001806.1 | + | 95546 | 0.73 | 0.413088 |
Target: 5'- cAGCCUGGGGCGcUGCGuCCgcgaGCAGCg -3' miRNA: 3'- cUUGGACCCCGU-ACGU-GGacg-CGUUG- -5' |
|||||||
5983 | 5' | -57.2 | NC_001806.1 | + | 95901 | 0.67 | 0.788338 |
Target: 5'- aGAACgUGGGGCuccugccGCACCUGaaggaGgAGCu -3' miRNA: 3'- -CUUGgACCCCGua-----CGUGGACg----CgUUG- -5' |
|||||||
5983 | 5' | -57.2 | NC_001806.1 | + | 97590 | 0.69 | 0.649042 |
Target: 5'- uGGACCUGGGGgAcUGCAUCgGCaaggacgcccGCGACg -3' miRNA: 3'- -CUUGGACCCCgU-ACGUGGaCG----------CGUUG- -5' |
|||||||
5983 | 5' | -57.2 | NC_001806.1 | + | 99806 | 0.66 | 0.832605 |
Target: 5'- -cACCUGaGGGCgauaGUGCGCCaccgGCGUGuACa -3' miRNA: 3'- cuUGGAC-CCCG----UACGUGGa---CGCGU-UG- -5' |
|||||||
5983 | 5' | -57.2 | NC_001806.1 | + | 105872 | 0.76 | 0.281253 |
Target: 5'- uGGCCUGGGcauggaccGCAUGUACUgGCGCGACa -3' miRNA: 3'- cUUGGACCC--------CGUACGUGGaCGCGUUG- -5' |
|||||||
5983 | 5' | -57.2 | NC_001806.1 | + | 107946 | 0.68 | 0.699384 |
Target: 5'- cGACCUGGGGCucguggGgGCCguguuuaUGCGCuACa -3' miRNA: 3'- cUUGGACCCCGua----CgUGG-------ACGCGuUG- -5' |
|||||||
5983 | 5' | -57.2 | NC_001806.1 | + | 109539 | 0.74 | 0.387211 |
Target: 5'- gGAGCCgGGGGagGUGCGCCUGgGCcagGGCg -3' miRNA: 3'- -CUUGGaCCCCg-UACGUGGACgCG---UUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home