miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5983 5' -57.2 NC_001806.1 + 2512 0.69 0.669688
Target:  5'- cGGCCUgggcggcgGGGGCGggcccggcGCACC-GCGCGGCg -3'
miRNA:   3'- cUUGGA--------CCCCGUa-------CGUGGaCGCGUUG- -5'
5983 5' -57.2 NC_001806.1 + 2758 0.7 0.59733
Target:  5'- cGGCCacGGGGCGcggGCggGCCUGCGCcGCg -3'
miRNA:   3'- cUUGGa-CCCCGUa--CG--UGGACGCGuUG- -5'
5983 5' -57.2 NC_001806.1 + 3471 0.67 0.759982
Target:  5'- cGGCCUGGGcGCG-GCGCCcgGCGUc-- -3'
miRNA:   3'- cUUGGACCC-CGUaCGUGGa-CGCGuug -5'
5983 5' -57.2 NC_001806.1 + 4017 0.67 0.769563
Target:  5'- cAGCCgcgugaucaGGGCGUaCugCUGCGCGGCg -3'
miRNA:   3'- cUUGGac-------CCCGUAcGugGACGCGUUG- -5'
5983 5' -57.2 NC_001806.1 + 4453 0.67 0.788338
Target:  5'- -cGCCcgGGGGCugccgGCGCC-GCGCucGACg -3'
miRNA:   3'- cuUGGa-CCCCGua---CGUGGaCGCG--UUG- -5'
5983 5' -57.2 NC_001806.1 + 13134 0.66 0.824092
Target:  5'- aGGCCUGGGGgGagagGCagGCUgacggggggaUGCGCAGCg -3'
miRNA:   3'- cUUGGACCCCgUa---CG--UGG----------ACGCGUUG- -5'
5983 5' -57.2 NC_001806.1 + 19486 0.67 0.788338
Target:  5'- uGAGag-GGGGCGggaaggGCGCUUGCGCuuGCg -3'
miRNA:   3'- -CUUggaCCCCGUa-----CGUGGACGCGu-UG- -5'
5983 5' -57.2 NC_001806.1 + 22076 0.67 0.769563
Target:  5'- -cGCCcccGGGGCggGUGCuguacggcgGCCUGgGCGACa -3'
miRNA:   3'- cuUGGa--CCCCG--UACG---------UGGACgCGUUG- -5'
5983 5' -57.2 NC_001806.1 + 22570 0.68 0.700401
Target:  5'- gGGGCCgcgGGGaGCcccgGCGCCgGCGCAGa -3'
miRNA:   3'- -CUUGGa--CCC-CGua--CGUGGaCGCGUUg -5'
5983 5' -57.2 NC_001806.1 + 23015 0.7 0.60765
Target:  5'- -cGCgCUGGuGCucAUGCGCCUGCGCGGg -3'
miRNA:   3'- cuUG-GACCcCG--UACGUGGACGCGUUg -5'
5983 5' -57.2 NC_001806.1 + 23946 0.68 0.69021
Target:  5'- gGGGCCUGGGGgGgccGCcggagugguccGCCgaGCGCGGCg -3'
miRNA:   3'- -CUUGGACCCCgUa--CG-----------UGGa-CGCGUUG- -5'
5983 5' -57.2 NC_001806.1 + 25006 0.67 0.759982
Target:  5'- cGGGCCgggacGGGGCGggGCGCUUGUGaGACc -3'
miRNA:   3'- -CUUGGa----CCCCGUa-CGUGGACGCgUUG- -5'
5983 5' -57.2 NC_001806.1 + 25917 0.68 0.710533
Target:  5'- --uCCgGGcGGCGUGCGCgC-GCGCGGCg -3'
miRNA:   3'- cuuGGaCC-CCGUACGUG-GaCGCGUUG- -5'
5983 5' -57.2 NC_001806.1 + 26801 0.69 0.638694
Target:  5'- -cACCUGGcGCGccUGCGCCUGCGacGCg -3'
miRNA:   3'- cuUGGACCcCGU--ACGUGGACGCguUG- -5'
5983 5' -57.2 NC_001806.1 + 27250 0.66 0.815401
Target:  5'- cGGGCCgccucgGGGGCGggacugGCcaaucggcggccGCCaGCGCGGCg -3'
miRNA:   3'- -CUUGGa-----CCCCGUa-----CG------------UGGaCGCGUUG- -5'
5983 5' -57.2 NC_001806.1 + 32203 0.68 0.737523
Target:  5'- gGGACgUGGGGUugGUgugcaaaggcacgcGCACCcGCGCGGCc -3'
miRNA:   3'- -CUUGgACCCCG--UA--------------CGUGGaCGCGUUG- -5'
5983 5' -57.2 NC_001806.1 + 46106 0.66 0.824092
Target:  5'- cGGCCcGGGGCcUGCGCggGCGCc-- -3'
miRNA:   3'- cUUGGaCCCCGuACGUGgaCGCGuug -5'
5983 5' -57.2 NC_001806.1 + 49168 0.66 0.83007
Target:  5'- cGAGCCagcgggcgauggggUGGGGUucaugggGUACCUGCGUg-- -3'
miRNA:   3'- -CUUGG--------------ACCCCGua-----CGUGGACGCGuug -5'
5983 5' -57.2 NC_001806.1 + 51240 0.66 0.824092
Target:  5'- cGACCgaacGGGCGUcaccaugcaGCGCCggacGCGCGGCg -3'
miRNA:   3'- cUUGGac--CCCGUA---------CGUGGa---CGCGUUG- -5'
5983 5' -57.2 NC_001806.1 + 62838 0.67 0.769563
Target:  5'- -cGCCgaGGcGGCGguggGCAUCaGCGCGACa -3'
miRNA:   3'- cuUGGa-CC-CCGUa---CGUGGaCGCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.