miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5983 5' -57.2 NC_001806.1 + 151045 0.72 0.47739
Target:  5'- cGGACgUGGGGCGagaagcGCACCcGCGCGGg -3'
miRNA:   3'- -CUUGgACCCCGUa-----CGUGGaCGCGUUg -5'
5983 5' -57.2 NC_001806.1 + 140665 0.75 0.346522
Target:  5'- -cAUCUGGaGGCuuuUGUugCUGCGCGGCg -3'
miRNA:   3'- cuUGGACC-CCGu--ACGugGACGCGUUG- -5'
5983 5' -57.2 NC_001806.1 + 136361 0.7 0.576774
Target:  5'- aAACCcGGGGCcgGCGCgCUcCGCGGCc -3'
miRNA:   3'- cUUGGaCCCCGuaCGUG-GAcGCGUUG- -5'
5983 5' -57.2 NC_001806.1 + 132333 0.66 0.805643
Target:  5'- gGGACCUGGucgaGGUGUGCgagguggGCCUGCGgCcACg -3'
miRNA:   3'- -CUUGGACC----CCGUACG-------UGGACGC-GuUG- -5'
5983 5' -57.2 NC_001806.1 + 130789 0.74 0.354411
Target:  5'- --gUCUGGGaGCuguUGUGCCUGUGCAGCa -3'
miRNA:   3'- cuuGGACCC-CGu--ACGUGGACGCGUUG- -5'
5983 5' -57.2 NC_001806.1 + 128311 0.68 0.694293
Target:  5'- uGggUC-GGGGCcagcuccaucaggccGUGCACCUGaCGCAGa -3'
miRNA:   3'- -CuuGGaCCCCG---------------UACGUGGAC-GCGUUg -5'
5983 5' -57.2 NC_001806.1 + 127212 0.66 0.832605
Target:  5'- cGGGCCccGGGGagacaGCGCCUGCGUu-- -3'
miRNA:   3'- -CUUGGa-CCCCgua--CGUGGACGCGuug -5'
5983 5' -57.2 NC_001806.1 + 119483 0.66 0.824092
Target:  5'- cGGACC--GGGCGUGCGgCCUGUGgCGuuGCa -3'
miRNA:   3'- -CUUGGacCCCGUACGU-GGACGC-GU--UG- -5'
5983 5' -57.2 NC_001806.1 + 119026 0.66 0.832605
Target:  5'- -cGCCgUGGcGGCGcUGCGCCuUGCGUggGGCu -3'
miRNA:   3'- cuUGG-ACC-CCGU-ACGUGG-ACGCG--UUG- -5'
5983 5' -57.2 NC_001806.1 + 116962 0.67 0.76861
Target:  5'- --cCCUGGcucccgugguucgGGUGUGCACCUuugacgGCGCGGCc -3'
miRNA:   3'- cuuGGACC-------------CCGUACGUGGA------CGCGUUG- -5'
5983 5' -57.2 NC_001806.1 + 115031 0.68 0.729589
Target:  5'- --uCCUGGacaacgcGGCAgccgUGUACCUGCGgAACg -3'
miRNA:   3'- cuuGGACC-------CCGU----ACGUGGACGCgUUG- -5'
5983 5' -57.2 NC_001806.1 + 113141 0.68 0.740483
Target:  5'- -cGCCUgGGGGCA-GCGCCUG-GCccACg -3'
miRNA:   3'- cuUGGA-CCCCGUaCGUGGACgCGu-UG- -5'
5983 5' -57.2 NC_001806.1 + 111197 0.72 0.486982
Target:  5'- cGGGcCCUGGGGaua--GCCUGCGCGGCc -3'
miRNA:   3'- -CUU-GGACCCCguacgUGGACGCGUUG- -5'
5983 5' -57.2 NC_001806.1 + 109539 0.74 0.387211
Target:  5'- gGAGCCgGGGGagGUGCGCCUGgGCcagGGCg -3'
miRNA:   3'- -CUUGGaCCCCg-UACGUGGACgCG---UUG- -5'
5983 5' -57.2 NC_001806.1 + 107946 0.68 0.699384
Target:  5'- cGACCUGGGGCucguggGgGCCguguuuaUGCGCuACa -3'
miRNA:   3'- cUUGGACCCCGua----CgUGG-------ACGCGuUG- -5'
5983 5' -57.2 NC_001806.1 + 105872 0.76 0.281253
Target:  5'- uGGCCUGGGcauggaccGCAUGUACUgGCGCGACa -3'
miRNA:   3'- cUUGGACCC--------CGUACGUGGaCGCGUUG- -5'
5983 5' -57.2 NC_001806.1 + 99806 0.66 0.832605
Target:  5'- -cACCUGaGGGCgauaGUGCGCCaccgGCGUGuACa -3'
miRNA:   3'- cuUGGAC-CCCG----UACGUGGa---CGCGU-UG- -5'
5983 5' -57.2 NC_001806.1 + 97590 0.69 0.649042
Target:  5'- uGGACCUGGGGgAcUGCAUCgGCaaggacgcccGCGACg -3'
miRNA:   3'- -CUUGGACCCCgU-ACGUGGaCG----------CGUUG- -5'
5983 5' -57.2 NC_001806.1 + 95901 0.67 0.788338
Target:  5'- aGAACgUGGGGCuccugccGCACCUGaaggaGgAGCu -3'
miRNA:   3'- -CUUGgACCCCGua-----CGUGGACg----CgUUG- -5'
5983 5' -57.2 NC_001806.1 + 95546 0.73 0.413088
Target:  5'- cAGCCUGGGGCGcUGCGuCCgcgaGCAGCg -3'
miRNA:   3'- cUUGGACCCCGU-ACGU-GGacg-CGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.