miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5987 5' -60.9 NC_001806.1 + 119285 0.84 0.062009
Target:  5'- cCCCACgcgGGGGCGCCCGCAGAccCGCc -3'
miRNA:   3'- uGGGUGa--CCCUGCGGGCGUCUa-GCGu -5'
5987 5' -60.9 NC_001806.1 + 52030 0.74 0.276918
Target:  5'- uCCCGCUcggcggcagcccGGaGGCGCCCGCGGAaacguUCGCGc -3'
miRNA:   3'- uGGGUGA------------CC-CUGCGGGCGUCU-----AGCGU- -5'
5987 5' -60.9 NC_001806.1 + 3377 0.72 0.346164
Target:  5'- aGCCC-C-GGGACGgCCGCcAGGUCGCc -3'
miRNA:   3'- -UGGGuGaCCCUGCgGGCG-UCUAGCGu -5'
5987 5' -60.9 NC_001806.1 + 96386 0.72 0.353734
Target:  5'- cCCCGCgcgGGGGCGCCgGUGGuucGUCGUAu -3'
miRNA:   3'- uGGGUGa--CCCUGCGGgCGUC---UAGCGU- -5'
5987 5' -60.9 NC_001806.1 + 107008 0.71 0.399076
Target:  5'- gGCCCACUcgcgcgcgcuugccGGGuuggcCGCCCGCGGGgcCGCGg -3'
miRNA:   3'- -UGGGUGA--------------CCCu----GCGGGCGUCUa-GCGU- -5'
5987 5' -60.9 NC_001806.1 + 123194 0.71 0.409926
Target:  5'- cACCCcCcGGGuCGCCCGCAGgGUgGCGg -3'
miRNA:   3'- -UGGGuGaCCCuGCGGGCGUC-UAgCGU- -5'
5987 5' -60.9 NC_001806.1 + 50489 0.7 0.44443
Target:  5'- uGCCC-CUGGGAaGCCCcGCGG-UCGUg -3'
miRNA:   3'- -UGGGuGACCCUgCGGG-CGUCuAGCGu -5'
5987 5' -60.9 NC_001806.1 + 20886 0.7 0.462281
Target:  5'- cGCCgCGCcGGGACGCCgauaCGCGGAcgaagCGCGg -3'
miRNA:   3'- -UGG-GUGaCCCUGCGG----GCGUCUa----GCGU- -5'
5987 5' -60.9 NC_001806.1 + 109826 0.69 0.50847
Target:  5'- cCCCAaUGGGACGCacgucCUGCAGGcCGCGu -3'
miRNA:   3'- uGGGUgACCCUGCG-----GGCGUCUaGCGU- -5'
5987 5' -60.9 NC_001806.1 + 16414 0.69 0.517945
Target:  5'- cACCCcuccgaucCUGGGgugaGCGCuCCGUGGAUCGUAa -3'
miRNA:   3'- -UGGGu-------GACCC----UGCG-GGCGUCUAGCGU- -5'
5987 5' -60.9 NC_001806.1 + 97426 0.69 0.526533
Target:  5'- gGCCUgggACUGGGugccaaaGCGCCCGUcGGUCuGCAc -3'
miRNA:   3'- -UGGG---UGACCC-------UGCGGGCGuCUAG-CGU- -5'
5987 5' -60.9 NC_001806.1 + 22117 0.69 0.527491
Target:  5'- cGCCCGggccuCUGGGggGCGCCCgagGCGGAggaggCGCGa -3'
miRNA:   3'- -UGGGU-----GACCC--UGCGGG---CGUCUa----GCGU- -5'
5987 5' -60.9 NC_001806.1 + 45299 0.69 0.527491
Target:  5'- gGCCCGCgcgGGGAgcCGCCCggcgaggaggGCGGG-CGCGa -3'
miRNA:   3'- -UGGGUGa--CCCU--GCGGG----------CGUCUaGCGU- -5'
5987 5' -60.9 NC_001806.1 + 147042 0.68 0.5371
Target:  5'- cGCCCGCgGGGACgGCCC-CGGAagucucCGCGu -3'
miRNA:   3'- -UGGGUGaCCCUG-CGGGcGUCUa-----GCGU- -5'
5987 5' -60.9 NC_001806.1 + 73983 0.68 0.5371
Target:  5'- uGCCCGCcccggccGGGGCGgcCCCGCAGGggGCu -3'
miRNA:   3'- -UGGGUGa------CCCUGC--GGGCGUCUagCGu -5'
5987 5' -60.9 NC_001806.1 + 4065 0.68 0.54677
Target:  5'- cGCCCACacggccgccGGGGCGCCCGaggccucgaacCGGcGUCGCGc -3'
miRNA:   3'- -UGGGUGa--------CCCUGCGGGC-----------GUC-UAGCGU- -5'
5987 5' -60.9 NC_001806.1 + 122940 0.68 0.54677
Target:  5'- gACCacgguCUGGuGGCGCuuGgGGGUCGCGg -3'
miRNA:   3'- -UGGgu---GACC-CUGCGggCgUCUAGCGU- -5'
5987 5' -60.9 NC_001806.1 + 12808 0.68 0.556494
Target:  5'- gGCCCAUguuguucgGGGugGCCgGgGGAUgGUAa -3'
miRNA:   3'- -UGGGUGa-------CCCugCGGgCgUCUAgCGU- -5'
5987 5' -60.9 NC_001806.1 + 109078 0.68 0.556494
Target:  5'- cGCCCGC-GGGGCcCCCGCGGA--GCc -3'
miRNA:   3'- -UGGGUGaCCCUGcGGGCGUCUagCGu -5'
5987 5' -60.9 NC_001806.1 + 22199 0.68 0.566268
Target:  5'- cGCCCgaGCUGGGcgACGCCgCGCAGcaGUaCGCc -3'
miRNA:   3'- -UGGG--UGACCC--UGCGG-GCGUC--UA-GCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.