Results 21 - 40 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5987 | 5' | -60.9 | NC_001806.1 | + | 24219 | 0.68 | 0.566268 |
Target: 5'- gGCCCGCc--GACggGCCCGCGGuGUCGCGg -3' miRNA: 3'- -UGGGUGaccCUG--CGGGCGUC-UAGCGU- -5' |
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5987 | 5' | -60.9 | NC_001806.1 | + | 7561 | 0.68 | 0.576085 |
Target: 5'- gGCCCGCgucGGGAUccacaCCGCGGuUCGCGu -3' miRNA: 3'- -UGGGUGa--CCCUGcg---GGCGUCuAGCGU- -5' |
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5987 | 5' | -60.9 | NC_001806.1 | + | 109355 | 0.68 | 0.58594 |
Target: 5'- aACUCGCUGacGGugGCCCGCuuggCGCc -3' miRNA: 3'- -UGGGUGAC--CCugCGGGCGucuaGCGu -5' |
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5987 | 5' | -60.9 | NC_001806.1 | + | 6127 | 0.68 | 0.58594 |
Target: 5'- gGCCCggcGCgaccGACGCCCGCAGAcggCGCc -3' miRNA: 3'- -UGGG---UGacc-CUGCGGGCGUCUa--GCGu -5' |
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5987 | 5' | -60.9 | NC_001806.1 | + | 151065 | 0.67 | 0.595827 |
Target: 5'- cACCCGCgcgGGGGuCGCgggggUCGCggGGGUCGCGg -3' miRNA: 3'- -UGGGUGa--CCCU-GCG-----GGCG--UCUAGCGU- -5' |
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5987 | 5' | -60.9 | NC_001806.1 | + | 113159 | 0.67 | 0.615669 |
Target: 5'- gGCCCAC-GGGcGgGUCCGaUGGGUCGCGg -3' miRNA: 3'- -UGGGUGaCCC-UgCGGGC-GUCUAGCGU- -5' |
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5987 | 5' | -60.9 | NC_001806.1 | + | 4281 | 0.67 | 0.615669 |
Target: 5'- gACCCGCcGGGGCuGCCCggccgugaaGCGGcccguggcGUCGCGg -3' miRNA: 3'- -UGGGUGaCCCUG-CGGG---------CGUC--------UAGCGU- -5' |
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5987 | 5' | -60.9 | NC_001806.1 | + | 139760 | 0.67 | 0.615669 |
Target: 5'- aGCgCACUGcccGACGCCgCGCAGGUggUGCAu -3' miRNA: 3'- -UGgGUGACc--CUGCGG-GCGUCUA--GCGU- -5' |
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5987 | 5' | -60.9 | NC_001806.1 | + | 148574 | 0.67 | 0.615669 |
Target: 5'- gACCCGCUGGGcgucACGCCCacuauCAGGUacaccaGCu -3' miRNA: 3'- -UGGGUGACCC----UGCGGGc----GUCUAg-----CGu -5' |
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5987 | 5' | -60.9 | NC_001806.1 | + | 151435 | 0.67 | 0.615669 |
Target: 5'- gGCCCACcggcggGGGGCGgCgGCGGGgcggcCGCGg -3' miRNA: 3'- -UGGGUGa-----CCCUGCgGgCGUCUa----GCGU- -5' |
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5987 | 5' | -60.9 | NC_001806.1 | + | 137689 | 0.67 | 0.624616 |
Target: 5'- cACCCAC-GGGGCGCugccggccuuuacCCGCAgcaaguGAUCGUc -3' miRNA: 3'- -UGGGUGaCCCUGCG-------------GGCGU------CUAGCGu -5' |
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5987 | 5' | -60.9 | NC_001806.1 | + | 65780 | 0.67 | 0.625611 |
Target: 5'- gGCUCGagagGGGACGUCgGCGGGUCcgGCGa -3' miRNA: 3'- -UGGGUga--CCCUGCGGgCGUCUAG--CGU- -5' |
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5987 | 5' | -60.9 | NC_001806.1 | + | 23574 | 0.67 | 0.625611 |
Target: 5'- aGCCaCAC-GGcGGCGCCCGCGGc-CGCc -3' miRNA: 3'- -UGG-GUGaCC-CUGCGGGCGUCuaGCGu -5' |
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5987 | 5' | -60.9 | NC_001806.1 | + | 30285 | 0.67 | 0.639536 |
Target: 5'- gGCCC-CcGGGGCGgagccggccgcccgcCCCGCGGAcgCGCGc -3' miRNA: 3'- -UGGGuGaCCCUGC---------------GGGCGUCUa-GCGU- -5' |
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5987 | 5' | -60.9 | NC_001806.1 | + | 86062 | 0.67 | 0.645502 |
Target: 5'- uCCC-CUGGGGCggcggcgucuaGCUCGCGGAggGCGg -3' miRNA: 3'- uGGGuGACCCUG-----------CGGGCGUCUagCGU- -5' |
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5987 | 5' | -60.9 | NC_001806.1 | + | 135618 | 0.67 | 0.645502 |
Target: 5'- cCCCGCUGuuGCGCgCCGgAGcUCGCGg -3' miRNA: 3'- uGGGUGACccUGCG-GGCgUCuAGCGU- -5' |
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5987 | 5' | -60.9 | NC_001806.1 | + | 22652 | 0.67 | 0.645502 |
Target: 5'- uGCCCGCcGGGuACgGCgCCGCGGGgauccUCGCc -3' miRNA: 3'- -UGGGUGaCCC-UG-CG-GGCGUCU-----AGCGu -5' |
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5987 | 5' | -60.9 | NC_001806.1 | + | 115228 | 0.66 | 0.655436 |
Target: 5'- aACCCcCgGGGACGCgCCGCcGGggGCGu -3' miRNA: 3'- -UGGGuGaCCCUGCG-GGCGuCUagCGU- -5' |
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5987 | 5' | -60.9 | NC_001806.1 | + | 810 | 0.66 | 0.664362 |
Target: 5'- aACCCuccgGGGGCGCCCGCGcAccaccaccgccccUCGCc -3' miRNA: 3'- -UGGGuga-CCCUGCGGGCGUcU-------------AGCGu -5' |
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5987 | 5' | -60.9 | NC_001806.1 | + | 52703 | 0.66 | 0.664362 |
Target: 5'- cACCCGgaGGuuccggaGGCGCCgCGCGGAcggCGCGg -3' miRNA: 3'- -UGGGUgaCC-------CUGCGG-GCGUCUa--GCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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