miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5987 5' -60.9 NC_001806.1 + 38174 0.66 0.714394
Target:  5'- gACCaCACacugUGGGGCGCUgGUugaGGAUCGUu -3'
miRNA:   3'- -UGG-GUG----ACCCUGCGGgCG---UCUAGCGu -5'
5987 5' -60.9 NC_001806.1 + 45299 0.69 0.527491
Target:  5'- gGCCCGCgcgGGGAgcCGCCCggcgaggaggGCGGG-CGCGa -3'
miRNA:   3'- -UGGGUGa--CCCU--GCGGG----------CGUCUaGCGU- -5'
5987 5' -60.9 NC_001806.1 + 50489 0.7 0.44443
Target:  5'- uGCCC-CUGGGAaGCCCcGCGG-UCGUg -3'
miRNA:   3'- -UGGGuGACCCUgCGGG-CGUCuAGCGu -5'
5987 5' -60.9 NC_001806.1 + 52030 0.74 0.276918
Target:  5'- uCCCGCUcggcggcagcccGGaGGCGCCCGCGGAaacguUCGCGc -3'
miRNA:   3'- uGGGUGA------------CC-CUGCGGGCGUCU-----AGCGU- -5'
5987 5' -60.9 NC_001806.1 + 52703 0.66 0.664362
Target:  5'- cACCCGgaGGuuccggaGGCGCCgCGCGGAcggCGCGg -3'
miRNA:   3'- -UGGGUgaCC-------CUGCGG-GCGUCUa--GCGU- -5'
5987 5' -60.9 NC_001806.1 + 63949 0.66 0.714394
Target:  5'- -gUUGCUGGuGAUgGCCCGCAGgGUCGCc -3'
miRNA:   3'- ugGGUGACC-CUG-CGGGCGUC-UAGCGu -5'
5987 5' -60.9 NC_001806.1 + 65780 0.67 0.625611
Target:  5'- gGCUCGagagGGGACGUCgGCGGGUCcgGCGa -3'
miRNA:   3'- -UGGGUga--CCCUGCGGgCGUCUAG--CGU- -5'
5987 5' -60.9 NC_001806.1 + 66426 0.66 0.675243
Target:  5'- gUgCGgUGGGGCGCCCccGCAGGUCcgGCu -3'
miRNA:   3'- uGgGUgACCCUGCGGG--CGUCUAG--CGu -5'
5987 5' -60.9 NC_001806.1 + 72016 0.66 0.704685
Target:  5'- uACCCA--GGGGCGCgCgGCGGAcugCGCu -3'
miRNA:   3'- -UGGGUgaCCCUGCG-GgCGUCUa--GCGu -5'
5987 5' -60.9 NC_001806.1 + 73983 0.68 0.5371
Target:  5'- uGCCCGCcccggccGGGGCGgcCCCGCAGGggGCu -3'
miRNA:   3'- -UGGGUGa------CCCUGC--GGGCGUCUagCGu -5'
5987 5' -60.9 NC_001806.1 + 78683 0.66 0.704685
Target:  5'- uGCUC-CUGGGcGCGCCCGUc-GUCGUg -3'
miRNA:   3'- -UGGGuGACCC-UGCGGGCGucUAGCGu -5'
5987 5' -60.9 NC_001806.1 + 82550 0.66 0.681163
Target:  5'- cGCCCGCgaUGGGAgcgugcgUGCCCGCguaaacccaccaaaGGGuUCGCGa -3'
miRNA:   3'- -UGGGUG--ACCCU-------GCGGGCG--------------UCU-AGCGU- -5'
5987 5' -60.9 NC_001806.1 + 86062 0.67 0.645502
Target:  5'- uCCC-CUGGGGCggcggcgucuaGCUCGCGGAggGCGg -3'
miRNA:   3'- uGGGuGACCCUG-----------CGGGCGUCUagCGU- -5'
5987 5' -60.9 NC_001806.1 + 96386 0.72 0.353734
Target:  5'- cCCCGCgcgGGGGCGCCgGUGGuucGUCGUAu -3'
miRNA:   3'- uGGGUGa--CCCUGCGGgCGUC---UAGCGU- -5'
5987 5' -60.9 NC_001806.1 + 97426 0.69 0.526533
Target:  5'- gGCCUgggACUGGGugccaaaGCGCCCGUcGGUCuGCAc -3'
miRNA:   3'- -UGGG---UGACCC-------UGCGGGCGuCUAG-CGU- -5'
5987 5' -60.9 NC_001806.1 + 97618 0.66 0.665352
Target:  5'- cGCCCGCgacgccauGGAccgcaucuuCGCCCGCAGGUacaaCGCGa -3'
miRNA:   3'- -UGGGUGac------CCU---------GCGGGCGUCUA----GCGU- -5'
5987 5' -60.9 NC_001806.1 + 105629 0.66 0.694918
Target:  5'- cCCCAUUGGGAccaauaCGCCCGCGuuUCu-- -3'
miRNA:   3'- uGGGUGACCCU------GCGGGCGUcuAGcgu -5'
5987 5' -60.9 NC_001806.1 + 107008 0.71 0.399076
Target:  5'- gGCCCACUcgcgcgcgcuugccGGGuuggcCGCCCGCGGGgcCGCGg -3'
miRNA:   3'- -UGGGUGA--------------CCCu----GCGGGCGUCUa-GCGU- -5'
5987 5' -60.9 NC_001806.1 + 109078 0.68 0.556494
Target:  5'- cGCCCGC-GGGGCcCCCGCGGA--GCc -3'
miRNA:   3'- -UGGGUGaCCCUGcGGGCGUCUagCGu -5'
5987 5' -60.9 NC_001806.1 + 109355 0.68 0.58594
Target:  5'- aACUCGCUGacGGugGCCCGCuuggCGCc -3'
miRNA:   3'- -UGGGUGAC--CCugCGGGCGucuaGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.