miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5987 5' -60.9 NC_001806.1 + 810 0.66 0.664362
Target:  5'- aACCCuccgGGGGCGCCCGCGcAccaccaccgccccUCGCc -3'
miRNA:   3'- -UGGGuga-CCCUGCGGGCGUcU-------------AGCGu -5'
5987 5' -60.9 NC_001806.1 + 3377 0.72 0.346164
Target:  5'- aGCCC-C-GGGACGgCCGCcAGGUCGCc -3'
miRNA:   3'- -UGGGuGaCCCUGCgGGCG-UCUAGCGu -5'
5987 5' -60.9 NC_001806.1 + 4065 0.68 0.54677
Target:  5'- cGCCCACacggccgccGGGGCGCCCGaggccucgaacCGGcGUCGCGc -3'
miRNA:   3'- -UGGGUGa--------CCCUGCGGGC-----------GUC-UAGCGU- -5'
5987 5' -60.9 NC_001806.1 + 4281 0.67 0.615669
Target:  5'- gACCCGCcGGGGCuGCCCggccgugaaGCGGcccguggcGUCGCGg -3'
miRNA:   3'- -UGGGUGaCCCUG-CGGG---------CGUC--------UAGCGU- -5'
5987 5' -60.9 NC_001806.1 + 6127 0.68 0.58594
Target:  5'- gGCCCggcGCgaccGACGCCCGCAGAcggCGCc -3'
miRNA:   3'- -UGGG---UGacc-CUGCGGGCGUCUa--GCGu -5'
5987 5' -60.9 NC_001806.1 + 7561 0.68 0.576085
Target:  5'- gGCCCGCgucGGGAUccacaCCGCGGuUCGCGu -3'
miRNA:   3'- -UGGGUGa--CCCUGcg---GGCGUCuAGCGU- -5'
5987 5' -60.9 NC_001806.1 + 12808 0.68 0.556494
Target:  5'- gGCCCAUguuguucgGGGugGCCgGgGGAUgGUAa -3'
miRNA:   3'- -UGGGUGa-------CCCugCGGgCgUCUAgCGU- -5'
5987 5' -60.9 NC_001806.1 + 16414 0.69 0.517945
Target:  5'- cACCCcuccgaucCUGGGgugaGCGCuCCGUGGAUCGUAa -3'
miRNA:   3'- -UGGGu-------GACCC----UGCG-GGCGUCUAGCGU- -5'
5987 5' -60.9 NC_001806.1 + 20773 0.66 0.674256
Target:  5'- gGCCC-CUGGGACuauaugaGCCCGaGGA-CGCc -3'
miRNA:   3'- -UGGGuGACCCUG-------CGGGCgUCUaGCGu -5'
5987 5' -60.9 NC_001806.1 + 20886 0.7 0.462281
Target:  5'- cGCCgCGCcGGGACGCCgauaCGCGGAcgaagCGCGg -3'
miRNA:   3'- -UGG-GUGaCCCUGCGG----GCGUCUa----GCGU- -5'
5987 5' -60.9 NC_001806.1 + 22117 0.69 0.527491
Target:  5'- cGCCCGggccuCUGGGggGCGCCCgagGCGGAggaggCGCGa -3'
miRNA:   3'- -UGGGU-----GACCC--UGCGGG---CGUCUa----GCGU- -5'
5987 5' -60.9 NC_001806.1 + 22199 0.68 0.566268
Target:  5'- cGCCCgaGCUGGGcgACGCCgCGCAGcaGUaCGCc -3'
miRNA:   3'- -UGGG--UGACCC--UGCGG-GCGUC--UA-GCGu -5'
5987 5' -60.9 NC_001806.1 + 22652 0.67 0.645502
Target:  5'- uGCCCGCcGGGuACgGCgCCGCGGGgauccUCGCc -3'
miRNA:   3'- -UGGGUGaCCC-UG-CG-GGCGUCU-----AGCGu -5'
5987 5' -60.9 NC_001806.1 + 23574 0.67 0.625611
Target:  5'- aGCCaCAC-GGcGGCGCCCGCGGc-CGCc -3'
miRNA:   3'- -UGG-GUGaCC-CUGCGGGCGUCuaGCGu -5'
5987 5' -60.9 NC_001806.1 + 24219 0.68 0.566268
Target:  5'- gGCCCGCc--GACggGCCCGCGGuGUCGCGg -3'
miRNA:   3'- -UGGGUGaccCUG--CGGGCGUC-UAGCGU- -5'
5987 5' -60.9 NC_001806.1 + 26961 0.66 0.714394
Target:  5'- cGCCCGCcu-GGCGCgCCGCGGcUCGUg -3'
miRNA:   3'- -UGGGUGaccCUGCG-GGCGUCuAGCGu -5'
5987 5' -60.9 NC_001806.1 + 29371 0.66 0.665352
Target:  5'- uACCUgauAgUGGGcgugACGCCCaGCGGGUCGUu -3'
miRNA:   3'- -UGGG---UgACCC----UGCGGG-CGUCUAGCGu -5'
5987 5' -60.9 NC_001806.1 + 30285 0.67 0.639536
Target:  5'- gGCCC-CcGGGGCGgagccggccgcccgcCCCGCGGAcgCGCGc -3'
miRNA:   3'- -UGGGuGaCCCUGC---------------GGGCGUCUa-GCGU- -5'
5987 5' -60.9 NC_001806.1 + 32698 0.66 0.685102
Target:  5'- aGCCU-CUGGGGCGCCC-CcuGUCGUu -3'
miRNA:   3'- -UGGGuGACCCUGCGGGcGucUAGCGu -5'
5987 5' -60.9 NC_001806.1 + 33352 0.66 0.675243
Target:  5'- cGCCCcgGCUgcaGGGGgGCCCGgAGAgcCGCGg -3'
miRNA:   3'- -UGGG--UGA---CCCUgCGGGCgUCUa-GCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.