miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5987 5' -60.9 NC_001806.1 + 86062 0.67 0.645502
Target:  5'- uCCC-CUGGGGCggcggcgucuaGCUCGCGGAggGCGg -3'
miRNA:   3'- uGGGuGACCCUG-----------CGGGCGUCUagCGU- -5'
5987 5' -60.9 NC_001806.1 + 22652 0.67 0.645502
Target:  5'- uGCCCGCcGGGuACgGCgCCGCGGGgauccUCGCc -3'
miRNA:   3'- -UGGGUGaCCC-UG-CG-GGCGUCU-----AGCGu -5'
5987 5' -60.9 NC_001806.1 + 135618 0.67 0.645502
Target:  5'- cCCCGCUGuuGCGCgCCGgAGcUCGCGg -3'
miRNA:   3'- uGGGUGACccUGCG-GGCgUCuAGCGU- -5'
5987 5' -60.9 NC_001806.1 + 30285 0.67 0.639536
Target:  5'- gGCCC-CcGGGGCGgagccggccgcccgcCCCGCGGAcgCGCGc -3'
miRNA:   3'- -UGGGuGaCCCUGC---------------GGGCGUCUa-GCGU- -5'
5987 5' -60.9 NC_001806.1 + 23574 0.67 0.625611
Target:  5'- aGCCaCAC-GGcGGCGCCCGCGGc-CGCc -3'
miRNA:   3'- -UGG-GUGaCC-CUGCGGGCGUCuaGCGu -5'
5987 5' -60.9 NC_001806.1 + 65780 0.67 0.625611
Target:  5'- gGCUCGagagGGGACGUCgGCGGGUCcgGCGa -3'
miRNA:   3'- -UGGGUga--CCCUGCGGgCGUCUAG--CGU- -5'
5987 5' -60.9 NC_001806.1 + 137689 0.67 0.624616
Target:  5'- cACCCAC-GGGGCGCugccggccuuuacCCGCAgcaaguGAUCGUc -3'
miRNA:   3'- -UGGGUGaCCCUGCG-------------GGCGU------CUAGCGu -5'
5987 5' -60.9 NC_001806.1 + 4281 0.67 0.615669
Target:  5'- gACCCGCcGGGGCuGCCCggccgugaaGCGGcccguggcGUCGCGg -3'
miRNA:   3'- -UGGGUGaCCCUG-CGGG---------CGUC--------UAGCGU- -5'
5987 5' -60.9 NC_001806.1 + 113159 0.67 0.615669
Target:  5'- gGCCCAC-GGGcGgGUCCGaUGGGUCGCGg -3'
miRNA:   3'- -UGGGUGaCCC-UgCGGGC-GUCUAGCGU- -5'
5987 5' -60.9 NC_001806.1 + 139760 0.67 0.615669
Target:  5'- aGCgCACUGcccGACGCCgCGCAGGUggUGCAu -3'
miRNA:   3'- -UGgGUGACc--CUGCGG-GCGUCUA--GCGU- -5'
5987 5' -60.9 NC_001806.1 + 148574 0.67 0.615669
Target:  5'- gACCCGCUGGGcgucACGCCCacuauCAGGUacaccaGCu -3'
miRNA:   3'- -UGGGUGACCC----UGCGGGc----GUCUAg-----CGu -5'
5987 5' -60.9 NC_001806.1 + 151435 0.67 0.615669
Target:  5'- gGCCCACcggcggGGGGCGgCgGCGGGgcggcCGCGg -3'
miRNA:   3'- -UGGGUGa-----CCCUGCgGgCGUCUa----GCGU- -5'
5987 5' -60.9 NC_001806.1 + 151065 0.67 0.595827
Target:  5'- cACCCGCgcgGGGGuCGCgggggUCGCggGGGUCGCGg -3'
miRNA:   3'- -UGGGUGa--CCCU-GCG-----GGCG--UCUAGCGU- -5'
5987 5' -60.9 NC_001806.1 + 6127 0.68 0.58594
Target:  5'- gGCCCggcGCgaccGACGCCCGCAGAcggCGCc -3'
miRNA:   3'- -UGGG---UGacc-CUGCGGGCGUCUa--GCGu -5'
5987 5' -60.9 NC_001806.1 + 109355 0.68 0.58594
Target:  5'- aACUCGCUGacGGugGCCCGCuuggCGCc -3'
miRNA:   3'- -UGGGUGAC--CCugCGGGCGucuaGCGu -5'
5987 5' -60.9 NC_001806.1 + 7561 0.68 0.576085
Target:  5'- gGCCCGCgucGGGAUccacaCCGCGGuUCGCGu -3'
miRNA:   3'- -UGGGUGa--CCCUGcg---GGCGUCuAGCGU- -5'
5987 5' -60.9 NC_001806.1 + 24219 0.68 0.566268
Target:  5'- gGCCCGCc--GACggGCCCGCGGuGUCGCGg -3'
miRNA:   3'- -UGGGUGaccCUG--CGGGCGUC-UAGCGU- -5'
5987 5' -60.9 NC_001806.1 + 22199 0.68 0.566268
Target:  5'- cGCCCgaGCUGGGcgACGCCgCGCAGcaGUaCGCc -3'
miRNA:   3'- -UGGG--UGACCC--UGCGG-GCGUC--UA-GCGu -5'
5987 5' -60.9 NC_001806.1 + 12808 0.68 0.556494
Target:  5'- gGCCCAUguuguucgGGGugGCCgGgGGAUgGUAa -3'
miRNA:   3'- -UGGGUGa-------CCCugCGGgCgUCUAgCGU- -5'
5987 5' -60.9 NC_001806.1 + 109078 0.68 0.556494
Target:  5'- cGCCCGC-GGGGCcCCCGCGGA--GCc -3'
miRNA:   3'- -UGGGUGaCCCUGcGGGCGUCUagCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.