miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5988 5' -51.8 NC_001806.1 + 101473 0.66 0.991577
Target:  5'- aCgCCAaccGCCGGGccg-GGACUGGAGc -3'
miRNA:   3'- -GgGGUa--CGGUUCauaaCCUGACCUCc -5'
5988 5' -51.8 NC_001806.1 + 97556 0.66 0.990869
Target:  5'- aCCaCCAaccUGaCCGAGUAcccgcucucgcgcgUGGAcCUGGGGGa -3'
miRNA:   3'- -GG-GGU---AC-GGUUCAUa-------------ACCU-GACCUCC- -5'
5988 5' -51.8 NC_001806.1 + 2457 0.66 0.990371
Target:  5'- cCCCCGgcgGCCccGUG--GGGgUGGGGGu -3'
miRNA:   3'- -GGGGUa--CGGuuCAUaaCCUgACCUCC- -5'
5988 5' -51.8 NC_001806.1 + 10683 0.66 0.989032
Target:  5'- aCCCCcgGUCGcAGaug-GGGCcGGGGGg -3'
miRNA:   3'- -GGGGuaCGGU-UCauaaCCUGaCCUCC- -5'
5988 5' -51.8 NC_001806.1 + 31357 0.66 0.987553
Target:  5'- cCCCCGUGUUug----UGGGgaGGGGGg -3'
miRNA:   3'- -GGGGUACGGuucauaACCUgaCCUCC- -5'
5988 5' -51.8 NC_001806.1 + 147329 0.66 0.985925
Target:  5'- cCCCCcgGCCcuGAGUc--GGAggGGGGGu -3'
miRNA:   3'- -GGGGuaCGG--UUCAuaaCCUgaCCUCC- -5'
5988 5' -51.8 NC_001806.1 + 13121 0.66 0.985925
Target:  5'- aCCCCcUGCU-GGUA--GGcCUGGGGGg -3'
miRNA:   3'- -GGGGuACGGuUCAUaaCCuGACCUCC- -5'
5988 5' -51.8 NC_001806.1 + 81823 0.66 0.984138
Target:  5'- aCCCCGcaggGCCu-GUGccacGGGCgGGAGGg -3'
miRNA:   3'- -GGGGUa---CGGuuCAUaa--CCUGaCCUCC- -5'
5988 5' -51.8 NC_001806.1 + 50875 0.66 0.984138
Target:  5'- aCCCccGCCAAGUucUGGGC-GGAc- -3'
miRNA:   3'- gGGGuaCGGUUCAuaACCUGaCCUcc -5'
5988 5' -51.8 NC_001806.1 + 3338 0.66 0.984138
Target:  5'- cCCUCcgGCCGcGgg--GGGCUGGcGGg -3'
miRNA:   3'- -GGGGuaCGGUuCauaaCCUGACCuCC- -5'
5988 5' -51.8 NC_001806.1 + 14123 0.67 0.982185
Target:  5'- uCCCCcUGCCGGaca-UGGuuUGGGGGg -3'
miRNA:   3'- -GGGGuACGGUUcauaACCugACCUCC- -5'
5988 5' -51.8 NC_001806.1 + 98198 0.67 0.980056
Target:  5'- gCCCGUugGUCGAGg---GGcaGCUGGGGGa -3'
miRNA:   3'- gGGGUA--CGGUUCauaaCC--UGACCUCC- -5'
5988 5' -51.8 NC_001806.1 + 26690 0.67 0.977743
Target:  5'- cCCCCAccGCCcGGcg-UGGGCccGGGGGg -3'
miRNA:   3'- -GGGGUa-CGGuUCauaACCUGa-CCUCC- -5'
5988 5' -51.8 NC_001806.1 + 91903 0.67 0.975237
Target:  5'- uCCCCAcgGCCA--UGggGcGGCUGGAGa -3'
miRNA:   3'- -GGGGUa-CGGUucAUaaC-CUGACCUCc -5'
5988 5' -51.8 NC_001806.1 + 37952 0.67 0.971681
Target:  5'- gCCCCGggGCgGGGUcccccaggguugcgAUUGGuuCUGGGGGc -3'
miRNA:   3'- -GGGGUa-CGgUUCA--------------UAACCu-GACCUCC- -5'
5988 5' -51.8 NC_001806.1 + 55062 0.68 0.969621
Target:  5'- cCUCCAUcaCCGcGUG--GGGCUGGAGGg -3'
miRNA:   3'- -GGGGUAc-GGUuCAUaaCCUGACCUCC- -5'
5988 5' -51.8 NC_001806.1 + 151266 0.68 0.966495
Target:  5'- gCCCAcGCCGggcGGUGggggccgGGGCcGGGGGg -3'
miRNA:   3'- gGGGUaCGGU---UCAUaa-----CCUGaCCUCC- -5'
5988 5' -51.8 NC_001806.1 + 47604 0.68 0.966495
Target:  5'- uUCCAcGCCGAGcuacGGGCgcgGGAGGa -3'
miRNA:   3'- gGGGUaCGGUUCauaaCCUGa--CCUCC- -5'
5988 5' -51.8 NC_001806.1 + 144018 0.69 0.951733
Target:  5'- aCCCCAacggaaagcgGCgGGGUGUUGGg--GGAGGc -3'
miRNA:   3'- -GGGGUa---------CGgUUCAUAACCugaCCUCC- -5'
5988 5' -51.8 NC_001806.1 + 24923 0.69 0.94293
Target:  5'- cCCCCGcgGCgGgaAGUugUGGACUgGGAGGc -3'
miRNA:   3'- -GGGGUa-CGgU--UCAuaACCUGA-CCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.