Results 21 - 29 of 29 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 5988 | 5' | -51.8 | NC_001806.1 | + | 147680 | 0.7 | 0.927876 |
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Target: 5'- gCCCCGgggGCCGGGgcgcggGGGCgggccccGGAGGc -3' miRNA: 3'- -GGGGUa--CGGUUCauaa--CCUGa------CCUCC- -5' |
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| 5988 | 5' | -51.8 | NC_001806.1 | + | 79245 | 0.7 | 0.904319 |
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Target: 5'- aCCCCcgGCCcuGUGgaccuuguugGGGC-GGAGGg -3' miRNA: 3'- -GGGGuaCGGuuCAUaa--------CCUGaCCUCC- -5' |
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| 5988 | 5' | -51.8 | NC_001806.1 | + | 49613 | 0.71 | 0.897814 |
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Target: 5'- uCCCCGc-CCAAGg--UGGAgguuCUGGAGGg -3' miRNA: 3'- -GGGGUacGGUUCauaACCU----GACCUCC- -5' |
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| 5988 | 5' | -51.8 | NC_001806.1 | + | 143235 | 0.71 | 0.897814 |
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Target: 5'- aCCCGUGCUgguGGUGcgGG-UUGGGGGg -3' miRNA: 3'- gGGGUACGGu--UCAUaaCCuGACCUCC- -5' |
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| 5988 | 5' | -51.8 | NC_001806.1 | + | 74037 | 0.71 | 0.891067 |
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Target: 5'- gCCCCGagGCCGuucagGUUcGGCUGGAGGa -3' miRNA: 3'- -GGGGUa-CGGUuca--UAAcCUGACCUCC- -5' |
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| 5988 | 5' | -51.8 | NC_001806.1 | + | 45504 | 0.71 | 0.884083 |
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Target: 5'- gCCCUGUGUgGGGUGaggggugGGGgUGGAGGg -3' miRNA: 3'- -GGGGUACGgUUCAUaa-----CCUgACCUCC- -5' |
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| 5988 | 5' | -51.8 | NC_001806.1 | + | 57799 | 0.72 | 0.820308 |
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Target: 5'- cCUCCGUGuCCAGGg---GGACUGGAu- -3' miRNA: 3'- -GGGGUAC-GGUUCauaaCCUGACCUcc -5' |
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| 5988 | 5' | -51.8 | NC_001806.1 | + | 12248 | 0.75 | 0.704871 |
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Target: 5'- cCCCCAU-CguAGUAggUGGugUGGGGGa -3' miRNA: 3'- -GGGGUAcGguUCAUa-ACCugACCUCC- -5' |
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| 5988 | 5' | -51.8 | NC_001806.1 | + | 147374 | 0.76 | 0.632164 |
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Target: 5'- gCCCC-UGCCGgcgcgaggggGGgacgcgUGGACUGGGGGg -3' miRNA: 3'- -GGGGuACGGU----------UCaua---ACCUGACCUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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