miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5989 3' -64.5 NC_001806.1 + 151683 0.66 0.577657
Target:  5'- gCUAGUCUCggccggggGGGCCCGGgCUgCCCGc -3'
miRNA:   3'- gGGUCAGGGg-------CCCGGGUCgGAaGGGC- -5'
5989 3' -64.5 NC_001806.1 + 151253 0.69 0.373835
Target:  5'- cCCCGccCCCCGGGCCCAcGCCgggcggugggggCCgGg -3'
miRNA:   3'- -GGGUcaGGGGCCCGGGU-CGGaa----------GGgC- -5'
5989 3' -64.5 NC_001806.1 + 150946 0.67 0.467553
Target:  5'- aCCCGG-CgCCGGaaccgaGCCCGGUCggCCCGc -3'
miRNA:   3'- -GGGUCaGgGGCC------CGGGUCGGaaGGGC- -5'
5989 3' -64.5 NC_001806.1 + 150889 0.73 0.223483
Target:  5'- gCCCGGgcacgggCCUCGGGCCCcaGGCaCggCCCGa -3'
miRNA:   3'- -GGGUCa------GGGGCCCGGG--UCG-GaaGGGC- -5'
5989 3' -64.5 NC_001806.1 + 150263 0.76 0.1328
Target:  5'- gUCGGUgCCCCGGGgcuuCCC-GCCUUCCCGa -3'
miRNA:   3'- gGGUCA-GGGGCCC----GGGuCGGAAGGGC- -5'
5989 3' -64.5 NC_001806.1 + 150171 0.68 0.432402
Target:  5'- gCCCGGcCCCCgauuuggGGGCCCAaCCcggugUCCCc -3'
miRNA:   3'- -GGGUCaGGGG-------CCCGGGUcGGa----AGGGc -5'
5989 3' -64.5 NC_001806.1 + 150116 0.7 0.332699
Target:  5'- gCCCcGUCCCCGGGgaccaaCCCGGCgccCCCa -3'
miRNA:   3'- -GGGuCAGGGGCCC------GGGUCGgaaGGGc -5'
5989 3' -64.5 NC_001806.1 + 148263 0.66 0.540002
Target:  5'- gCCCccUCCCC-GGCCCGcCCUUUCCu -3'
miRNA:   3'- -GGGucAGGGGcCCGGGUcGGAAGGGc -5'
5989 3' -64.5 NC_001806.1 + 147296 0.69 0.384643
Target:  5'- gUCAGgggggUCCCGGGCCCAcccuggccgcGCCccCCCGg -3'
miRNA:   3'- gGGUCa----GGGGCCCGGGU----------CGGaaGGGC- -5'
5989 3' -64.5 NC_001806.1 + 145004 0.68 0.441683
Target:  5'- cCCCGG-CCCgGGGCCCcacaaCggCCCGg -3'
miRNA:   3'- -GGGUCaGGGgCCCGGGucg--GaaGGGC- -5'
5989 3' -64.5 NC_001806.1 + 144956 0.73 0.203775
Target:  5'- gCCGGcCCCCGuggcGGCCCGGCCcggggcCCCGg -3'
miRNA:   3'- gGGUCaGGGGC----CCGGGUCGGaa----GGGC- -5'
5989 3' -64.5 NC_001806.1 + 143970 0.67 0.476348
Target:  5'- cCCCuG-CCCCGGcgaccCCCGGCCcgcacgaUCCCGa -3'
miRNA:   3'- -GGGuCaGGGGCCc----GGGUCGGa------AGGGC- -5'
5989 3' -64.5 NC_001806.1 + 143610 0.66 0.577657
Target:  5'- nCCCGuUCCCCGGGggccguuaucUCCAGCgc-CCCGu -3'
miRNA:   3'- -GGGUcAGGGGCCC----------GGGUCGgaaGGGC- -5'
5989 3' -64.5 NC_001806.1 + 143582 0.68 0.416643
Target:  5'- aCCCA--CCUCGGGauaCCCAGCCccggUCCCc -3'
miRNA:   3'- -GGGUcaGGGGCCC---GGGUCGGa---AGGGc -5'
5989 3' -64.5 NC_001806.1 + 143535 0.74 0.185593
Target:  5'- aCCCGG-CCCgGcccGGCCCGGCCcggCCCGg -3'
miRNA:   3'- -GGGUCaGGGgC---CCGGGUCGGaa-GGGC- -5'
5989 3' -64.5 NC_001806.1 + 143446 0.71 0.30541
Target:  5'- uCCCAccCCCCGGGCCguGuCCUugcuuUCCCc -3'
miRNA:   3'- -GGGUcaGGGGCCCGGguC-GGA-----AGGGc -5'
5989 3' -64.5 NC_001806.1 + 137818 0.67 0.494181
Target:  5'- cCCCAGUa--CGcGGCCC-GCCUgcggCCCGu -3'
miRNA:   3'- -GGGUCAgggGC-CCGGGuCGGAa---GGGC- -5'
5989 3' -64.5 NC_001806.1 + 137682 0.66 0.521481
Target:  5'- cCCCGGcCaCCCacgGGGCgcugCCGGCCUUuaCCCGc -3'
miRNA:   3'- -GGGUCaG-GGG---CCCG----GGUCGGAA--GGGC- -5'
5989 3' -64.5 NC_001806.1 + 132998 0.69 0.390125
Target:  5'- cCUCAGagCCCUGGGCCgGggccgucuuggagcGCCUggUCCCGg -3'
miRNA:   3'- -GGGUCa-GGGGCCCGGgU--------------CGGA--AGGGC- -5'
5989 3' -64.5 NC_001806.1 + 132895 0.67 0.476348
Target:  5'- gCCCAGcUCCUgGcGGCCCuGGCCgacCUCGg -3'
miRNA:   3'- -GGGUC-AGGGgC-CCGGG-UCGGaa-GGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.