miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5989 5' -51 NC_001806.1 + 82422 0.66 0.995457
Target:  5'- --aGAGuAGGGGCccGCCUccCCGUCCc -3'
miRNA:   3'- cagCUC-UUCCUGuuUGGGuuGGCAGG- -5'
5989 5' -51 NC_001806.1 + 68625 0.66 0.995457
Target:  5'- cGUgGAGu-GGAUAGACCgcuggcaAACCGUCa -3'
miRNA:   3'- -CAgCUCuuCCUGUUUGGg------UUGGCAGg -5'
5989 5' -51 NC_001806.1 + 64657 0.66 0.994713
Target:  5'- -gCGAGggGGGCu-GCCgAA-UGUCCu -3'
miRNA:   3'- caGCUCuuCCUGuuUGGgUUgGCAGG- -5'
5989 5' -51 NC_001806.1 + 90838 0.66 0.994713
Target:  5'- uUCGAGgcGGuCGuggGACCC-GCCG-CCg -3'
miRNA:   3'- cAGCUCuuCCuGU---UUGGGuUGGCaGG- -5'
5989 5' -51 NC_001806.1 + 93913 0.66 0.994713
Target:  5'- --aGAGggGGACcccgGGGCUCAGCCagacgCCg -3'
miRNA:   3'- cagCUCuuCCUG----UUUGGGUUGGca---GG- -5'
5989 5' -51 NC_001806.1 + 65162 0.66 0.994713
Target:  5'- aGUCG-GAAucGGACGA--CCggUCGUCCg -3'
miRNA:   3'- -CAGCuCUU--CCUGUUugGGuuGGCAGG- -5'
5989 5' -51 NC_001806.1 + 97186 0.66 0.994713
Target:  5'- cGUCGAGGAGGugGAcgcgcGCUCGGuguacCCGUa- -3'
miRNA:   3'- -CAGCUCUUCCugUU-----UGGGUU-----GGCAgg -5'
5989 5' -51 NC_001806.1 + 67785 0.66 0.993873
Target:  5'- gGUUGuGuuGGcCGAcugGCCCGGCgCGUCCg -3'
miRNA:   3'- -CAGCuCuuCCuGUU---UGGGUUG-GCAGG- -5'
5989 5' -51 NC_001806.1 + 40242 0.66 0.993873
Target:  5'- -aCGGGGacuagcuguAGGA-GGACCCAGUCGUCCu -3'
miRNA:   3'- caGCUCU---------UCCUgUUUGGGUUGGCAGG- -5'
5989 5' -51 NC_001806.1 + 30501 0.66 0.992928
Target:  5'- uGUCGAGcAGGAgGcGgCgGugCGUCCg -3'
miRNA:   3'- -CAGCUCuUCCUgUuUgGgUugGCAGG- -5'
5989 5' -51 NC_001806.1 + 73459 0.66 0.992928
Target:  5'- -cCGGGguGG-CcGGCCCGGCCG-CCg -3'
miRNA:   3'- caGCUCuuCCuGuUUGGGUUGGCaGG- -5'
5989 5' -51 NC_001806.1 + 94063 0.66 0.991871
Target:  5'- cUCGGGcAGGuGCAGACCUAugUGUUUc -3'
miRNA:   3'- cAGCUCuUCC-UGUUUGGGUugGCAGG- -5'
5989 5' -51 NC_001806.1 + 15019 0.66 0.991871
Target:  5'- aGUCGGGucguGGGGCGAGuugCCAGCgGcCCg -3'
miRNA:   3'- -CAGCUCu---UCCUGUUUg--GGUUGgCaGG- -5'
5989 5' -51 NC_001806.1 + 65638 0.67 0.990693
Target:  5'- -gCGAGAGGGGC---CCCGGCgG-CCu -3'
miRNA:   3'- caGCUCUUCCUGuuuGGGUUGgCaGG- -5'
5989 5' -51 NC_001806.1 + 113764 0.67 0.990693
Target:  5'- -gCGGGcAGGGCAAGCCgAGCUGa-- -3'
miRNA:   3'- caGCUCuUCCUGUUUGGgUUGGCagg -5'
5989 5' -51 NC_001806.1 + 66816 0.67 0.990693
Target:  5'- -cCGAGcGGGGCcGGCCCGggugGCCGgugugcgCCg -3'
miRNA:   3'- caGCUCuUCCUGuUUGGGU----UGGCa------GG- -5'
5989 5' -51 NC_001806.1 + 132058 0.67 0.990693
Target:  5'- aGUUGAGAgagcgucguGGGGCccGCCC-GCCGcCCc -3'
miRNA:   3'- -CAGCUCU---------UCCUGuuUGGGuUGGCaGG- -5'
5989 5' -51 NC_001806.1 + 91274 0.67 0.989384
Target:  5'- -cCGAGguGGACGAcgccgGCCCGGCgGaCCc -3'
miRNA:   3'- caGCUCuuCCUGUU-----UGGGUUGgCaGG- -5'
5989 5' -51 NC_001806.1 + 77153 0.67 0.989384
Target:  5'- cUCGGGggGcGCGuGGCCCAACaCG-CCg -3'
miRNA:   3'- cAGCUCuuCcUGU-UUGGGUUG-GCaGG- -5'
5989 5' -51 NC_001806.1 + 94812 0.67 0.989384
Target:  5'- -gCGGGggGcGACGGGcagcCCCAcCCGUCg -3'
miRNA:   3'- caGCUCuuC-CUGUUU----GGGUuGGCAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.