Results 1 - 20 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5991 | 5' | -59.4 | NC_001806.1 | + | 143228 | 0.77 | 0.236569 |
Target: 5'- aCCCCCAAcCCGUG-CUGGUggugcggguuggGGGGGGAu -3' miRNA: 3'- -GGGGGUUuGGUACaGGCCG------------UCCCCCU- -5' |
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5991 | 5' | -59.4 | NC_001806.1 | + | 1459 | 0.76 | 0.268265 |
Target: 5'- gCCCCCGGGCCGUcGUcgucgccgcgcagcaCCaGCGGGGGGGc -3' miRNA: 3'- -GGGGGUUUGGUA-CA---------------GGcCGUCCCCCU- -5' |
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5991 | 5' | -59.4 | NC_001806.1 | + | 92885 | 0.75 | 0.290586 |
Target: 5'- cCCCCCAGcgugcaggcugcgGCCGcgugGUCCGcGCAGGGcGGGg -3' miRNA: 3'- -GGGGGUU-------------UGGUa---CAGGC-CGUCCC-CCU- -5' |
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5991 | 5' | -59.4 | NC_001806.1 | + | 49432 | 0.75 | 0.31155 |
Target: 5'- uCCCCgCGGuccuCCGcagGcCCGGCAGGGGGGa -3' miRNA: 3'- -GGGG-GUUu---GGUa--CaGGCCGUCCCCCU- -5' |
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5991 | 5' | -59.4 | NC_001806.1 | + | 20368 | 0.74 | 0.363035 |
Target: 5'- gCCCgCCGucCCGUuggucccggcGUCCGGCGGGcGGGAc -3' miRNA: 3'- -GGG-GGUuuGGUA----------CAGGCCGUCC-CCCU- -5' |
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5991 | 5' | -59.4 | NC_001806.1 | + | 151258 | 0.74 | 0.363035 |
Target: 5'- cCCCCCGGGCCcacgCCgGGCGGuGGGGGc -3' miRNA: 3'- -GGGGGUUUGGuacaGG-CCGUC-CCCCU- -5' |
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5991 | 5' | -59.4 | NC_001806.1 | + | 113366 | 0.74 | 0.347741 |
Target: 5'- gCCCCUGGcGCUAUGUCCGGCGGcguuccGGGAc -3' miRNA: 3'- -GGGGGUU-UGGUACAGGCCGUCc-----CCCU- -5' |
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5991 | 5' | -59.4 | NC_001806.1 | + | 45150 | 0.73 | 0.37879 |
Target: 5'- aCCCCCGAcCCAagcUGUCCGGCuGGacaaGGAu -3' miRNA: 3'- -GGGGGUUuGGU---ACAGGCCGuCCc---CCU- -5' |
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5991 | 5' | -59.4 | NC_001806.1 | + | 24338 | 0.72 | 0.437415 |
Target: 5'- gCCUCGGGCCgcGUGUUCGGCccGGGGGu -3' miRNA: 3'- gGGGGUUUGG--UACAGGCCGu-CCCCCu -5' |
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5991 | 5' | -59.4 | NC_001806.1 | + | 5923 | 0.72 | 0.428722 |
Target: 5'- gCCCCC---CCAUuggCCGGCGGGcGGGAc -3' miRNA: 3'- -GGGGGuuuGGUAca-GGCCGUCC-CCCU- -5' |
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5991 | 5' | -59.4 | NC_001806.1 | + | 76335 | 0.72 | 0.428722 |
Target: 5'- gCCgCCGAGCU-UGUCCgGGCAGGGGu- -3' miRNA: 3'- -GGgGGUUUGGuACAGG-CCGUCCCCcu -5' |
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5991 | 5' | -59.4 | NC_001806.1 | + | 52565 | 0.72 | 0.464087 |
Target: 5'- uCCCCCGGACgaCAUGgccagCGGCccGGGGGGGc -3' miRNA: 3'- -GGGGGUUUG--GUACag---GCCG--UCCCCCU- -5' |
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5991 | 5' | -59.4 | NC_001806.1 | + | 148108 | 0.71 | 0.473165 |
Target: 5'- -gUCCGAGCCGcGgCCGGCuGGGGGGc -3' miRNA: 3'- ggGGGUUUGGUaCaGGCCGuCCCCCU- -5' |
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5991 | 5' | -59.4 | NC_001806.1 | + | 37783 | 0.71 | 0.482331 |
Target: 5'- gCUCCgGGGCCGgggcgcggggGUCCgcgGGCGGGGGGGc -3' miRNA: 3'- -GGGGgUUUGGUa---------CAGG---CCGUCCCCCU- -5' |
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5991 | 5' | -59.4 | NC_001806.1 | + | 48372 | 0.71 | 0.491583 |
Target: 5'- cCCCCCcGACCgAUGUCa-GCcuGGGGGAc -3' miRNA: 3'- -GGGGGuUUGG-UACAGgcCGu-CCCCCU- -5' |
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5991 | 5' | -59.4 | NC_001806.1 | + | 21264 | 0.71 | 0.500916 |
Target: 5'- aCCCCCAcGACCucgacgacGcCCGGCGGGacGGGAg -3' miRNA: 3'- -GGGGGU-UUGGua------CaGGCCGUCC--CCCU- -5' |
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5991 | 5' | -59.4 | NC_001806.1 | + | 148785 | 0.7 | 0.529361 |
Target: 5'- gCCCCCGcaacuGCCGggGUCUuccucGCGGGGGGGg -3' miRNA: 3'- -GGGGGUu----UGGUa-CAGGc----CGUCCCCCU- -5' |
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5991 | 5' | -59.4 | NC_001806.1 | + | 28816 | 0.7 | 0.529361 |
Target: 5'- cCCCCCucuuCCGaGgCCaGCAGGGGGGc -3' miRNA: 3'- -GGGGGuuu-GGUaCaGGcCGUCCCCCU- -5' |
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5991 | 5' | -59.4 | NC_001806.1 | + | 6074 | 0.7 | 0.529361 |
Target: 5'- gCCCCGggggcgGGCCcgGg-CGGCGGGGGGc -3' miRNA: 3'- gGGGGU------UUGGuaCagGCCGUCCCCCu -5' |
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5991 | 5' | -59.4 | NC_001806.1 | + | 148948 | 0.7 | 0.572076 |
Target: 5'- cCCCCCAcuucggucuCCGccucagagucgcugcUGUCCGGCAGGucucggucgcaGGGAa -3' miRNA: 3'- -GGGGGUuu-------GGU---------------ACAGGCCGUCC-----------CCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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