miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5994 3' -57.1 NC_001806.1 + 78936 0.66 0.850902
Target:  5'- gCCCGgGg--CCCGCCguguCUGGuGCUCGu -3'
miRNA:   3'- -GGGCgUauaGGGUGG----GACCuCGAGUu -5'
5994 3' -57.1 NC_001806.1 + 82572 0.66 0.842891
Target:  5'- gCCCGCGUAaaCCCACCaaaGGGUUCGc -3'
miRNA:   3'- -GGGCGUAUa-GGGUGGgacCUCGAGUu -5'
5994 3' -57.1 NC_001806.1 + 40930 0.66 0.842891
Target:  5'- uUCGCGagGUUCCGCCgUGGGGC-CGAc -3'
miRNA:   3'- gGGCGUa-UAGGGUGGgACCUCGaGUU- -5'
5994 3' -57.1 NC_001806.1 + 89902 0.66 0.834688
Target:  5'- cCCCGCGUugCCgGCCgCcGGGGUUCAu -3'
miRNA:   3'- -GGGCGUAuaGGgUGG-GaCCUCGAGUu -5'
5994 3' -57.1 NC_001806.1 + 20299 0.66 0.827992
Target:  5'- cCCCGCccccuuggggcgGUCCCGCCCgccggccaaugggGGGGCggCAAg -3'
miRNA:   3'- -GGGCGua----------UAGGGUGGGa------------CCUCGa-GUU- -5'
5994 3' -57.1 NC_001806.1 + 73352 0.66 0.826299
Target:  5'- gUCGcCGUAUCCgGCCucuccggggcugCUGGAGCUCu- -3'
miRNA:   3'- gGGC-GUAUAGGgUGG------------GACCUCGAGuu -5'
5994 3' -57.1 NC_001806.1 + 23129 0.67 0.817734
Target:  5'- gCCGCGggaCCCGCgCCUGccGAGCUCc- -3'
miRNA:   3'- gGGCGUauaGGGUG-GGAC--CUCGAGuu -5'
5994 3' -57.1 NC_001806.1 + 27638 0.67 0.808998
Target:  5'- aCCCGCAUuggUC-CCCUGGGGUUCc- -3'
miRNA:   3'- -GGGCGUAuagGGuGGGACCUCGAGuu -5'
5994 3' -57.1 NC_001806.1 + 28118 0.67 0.800102
Target:  5'- aCCCcCAUGgagcCCCGCCCcGGAGCg--- -3'
miRNA:   3'- -GGGcGUAUa---GGGUGGGaCCUCGaguu -5'
5994 3' -57.1 NC_001806.1 + 119299 0.67 0.781861
Target:  5'- gCCCGCAga-CCCGCCCaucgucGGGGCgucCGAc -3'
miRNA:   3'- -GGGCGUauaGGGUGGGa-----CCUCGa--GUU- -5'
5994 3' -57.1 NC_001806.1 + 137230 0.67 0.772533
Target:  5'- cCCCGCAgg-CCUGCCCcucagGGAGUUUc- -3'
miRNA:   3'- -GGGCGUauaGGGUGGGa----CCUCGAGuu -5'
5994 3' -57.1 NC_001806.1 + 135618 0.67 0.772533
Target:  5'- cCCCGC-UGUUgCGCgCC-GGAGCUCGc -3'
miRNA:   3'- -GGGCGuAUAGgGUG-GGaCCUCGAGUu -5'
5994 3' -57.1 NC_001806.1 + 128696 0.68 0.76308
Target:  5'- cCCCGCGca-CCUcgGCCgUGGAGUUCAc -3'
miRNA:   3'- -GGGCGUauaGGG--UGGgACCUCGAGUu -5'
5994 3' -57.1 NC_001806.1 + 135672 0.68 0.753509
Target:  5'- gCCCGCGUugGUCUCGCgCaGGcGCUCGAu -3'
miRNA:   3'- -GGGCGUA--UAGGGUGgGaCCuCGAGUU- -5'
5994 3' -57.1 NC_001806.1 + 106673 0.68 0.734056
Target:  5'- cCCCGCGgacgaaaaCCC-CCCgGGGGCUCu- -3'
miRNA:   3'- -GGGCGUaua-----GGGuGGGaCCUCGAGuu -5'
5994 3' -57.1 NC_001806.1 + 120794 0.68 0.724191
Target:  5'- cCCCGCGccguUGgccCCCGCCuCUGGGGUUUg- -3'
miRNA:   3'- -GGGCGU----AUa--GGGUGG-GACCUCGAGuu -5'
5994 3' -57.1 NC_001806.1 + 57967 0.68 0.724191
Target:  5'- cCCCGCcucUCCCGCCCgGGcAGCgccaUCGAg -3'
miRNA:   3'- -GGGCGuauAGGGUGGGaCC-UCG----AGUU- -5'
5994 3' -57.1 NC_001806.1 + 77703 0.69 0.714247
Target:  5'- cCCCGCu--UCCgacggaCACCCUGGAGUcggccUCGAc -3'
miRNA:   3'- -GGGCGuauAGG------GUGGGACCUCG-----AGUU- -5'
5994 3' -57.1 NC_001806.1 + 54112 0.69 0.713248
Target:  5'- gCCCGCAUgggggguGUCCCgggGCCCaGGGGC-CGGu -3'
miRNA:   3'- -GGGCGUA-------UAGGG---UGGGaCCUCGaGUU- -5'
5994 3' -57.1 NC_001806.1 + 93892 0.69 0.704232
Target:  5'- gCCCGCGggaggccgCCCcgaagagggggACCCcGGGGCUCAGc -3'
miRNA:   3'- -GGGCGUaua-----GGG-----------UGGGaCCUCGAGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.