miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5995 5' -60.6 NC_001806.1 + 77398 0.66 0.729245
Target:  5'- gGCGGCCgCgcccGCGCCCcugcUCGUGGa- -3'
miRNA:   3'- aCGCCGGgGaa--UGUGGGc---AGCACCca -5'
5995 5' -60.6 NC_001806.1 + 75684 0.66 0.715808
Target:  5'- gGCGGCCCagcGCGCCCGcaguagccacgagCGcUGGGc -3'
miRNA:   3'- aCGCCGGGgaaUGUGGGCa------------GC-ACCCa -5'
5995 5' -60.6 NC_001806.1 + 86330 0.66 0.709039
Target:  5'- gGaCGGCCCCgaACGCCUGcagucccUCGggcagGGGUc -3'
miRNA:   3'- aC-GCCGGGGaaUGUGGGC-------AGCa----CCCA- -5'
5995 5' -60.6 NC_001806.1 + 20353 0.66 0.700291
Target:  5'- gGCGGCCCUUgggcCGCCCGcCGUcccguuGGUc -3'
miRNA:   3'- aCGCCGGGGAau--GUGGGCaGCAc-----CCA- -5'
5995 5' -60.6 NC_001806.1 + 55266 0.66 0.700291
Target:  5'- gGcCGGCCCCcucCGCCCagagcaCGUGGGg -3'
miRNA:   3'- aC-GCCGGGGaauGUGGGca----GCACCCa -5'
5995 5' -60.6 NC_001806.1 + 69595 0.66 0.700291
Target:  5'- gGCGGCUCUgcgagGCggucgGCCUGUCGgGGGg -3'
miRNA:   3'- aCGCCGGGGaa---UG-----UGGGCAGCaCCCa -5'
5995 5' -60.6 NC_001806.1 + 28504 0.66 0.699317
Target:  5'- -aUGGCCCCUUugacucagacgcaGgGCCCGgggucgcCGUGGGa -3'
miRNA:   3'- acGCCGGGGAA-------------UgUGGGCa------GCACCCa -5'
5995 5' -60.6 NC_001806.1 + 90239 0.66 0.699317
Target:  5'- aGCGGCgauuccgacgucgCCgUgGCGCCCcugGUCGUGGGc -3'
miRNA:   3'- aCGCCG-------------GGgAaUGUGGG---CAGCACCCa -5'
5995 5' -60.6 NC_001806.1 + 88070 0.66 0.690521
Target:  5'- gGCaGGCCCCUgGCcgccaGCUCGUUcagGUGGGa -3'
miRNA:   3'- aCG-CCGGGGAaUG-----UGGGCAG---CACCCa -5'
5995 5' -60.6 NC_001806.1 + 78675 0.67 0.670852
Target:  5'- gGCGGCagugcUCCUgggcGCGCCCGUCGUcGuGGc -3'
miRNA:   3'- aCGCCG-----GGGAa---UGUGGGCAGCA-C-CCa -5'
5995 5' -60.6 NC_001806.1 + 38638 0.67 0.670852
Target:  5'- gGUGGUggaugUCCUUAUACCCGUgGUgccGGGg -3'
miRNA:   3'- aCGCCG-----GGGAAUGUGGGCAgCA---CCCa -5'
5995 5' -60.6 NC_001806.1 + 50070 0.67 0.670852
Target:  5'- cGCGaGCCUCacggcgUUGCGuCCCGUCG-GGGc -3'
miRNA:   3'- aCGC-CGGGG------AAUGU-GGGCAGCaCCCa -5'
5995 5' -60.6 NC_001806.1 + 32967 0.67 0.660969
Target:  5'- cGgGGCCCCUUGgGUCCGcCG-GGGc -3'
miRNA:   3'- aCgCCGGGGAAUgUGGGCaGCaCCCa -5'
5995 5' -60.6 NC_001806.1 + 119625 0.67 0.660969
Target:  5'- uUGUGGCCCCa-GCGCCCcaCGggcccgGGGg -3'
miRNA:   3'- -ACGCCGGGGaaUGUGGGcaGCa-----CCCa -5'
5995 5' -60.6 NC_001806.1 + 38207 0.67 0.660969
Target:  5'- uUGgGGCCCUgc-CGCuCCGUCGgacgaggcgucUGGGUg -3'
miRNA:   3'- -ACgCCGGGGaauGUG-GGCAGC-----------ACCCA- -5'
5995 5' -60.6 NC_001806.1 + 6069 0.67 0.641145
Target:  5'- cGcCGGCCCCggggGCggGCCCGggCGgcgGGGg -3'
miRNA:   3'- aC-GCCGGGGaa--UG--UGGGCa-GCa--CCCa -5'
5995 5' -60.6 NC_001806.1 + 95430 0.67 0.641145
Target:  5'- cGCGGgCCCgggggGCagggGCCCGagaCGUGGGg -3'
miRNA:   3'- aCGCCgGGGaa---UG----UGGGCa--GCACCCa -5'
5995 5' -60.6 NC_001806.1 + 57880 0.67 0.640153
Target:  5'- cGCGccauccucGCCCCccgaGCGCCCccgcuugGUCGUGGGa -3'
miRNA:   3'- aCGC--------CGGGGaa--UGUGGG-------CAGCACCCa -5'
5995 5' -60.6 NC_001806.1 + 91179 0.67 0.621295
Target:  5'- cGCGGCCCgCgccaACgCCGUCG-GGGc -3'
miRNA:   3'- aCGCCGGG-GaaugUG-GGCAGCaCCCa -5'
5995 5' -60.6 NC_001806.1 + 4736 0.68 0.591593
Target:  5'- cGCGGCCCCggGCcgggGCCCgGUCGccGGc -3'
miRNA:   3'- aCGCCGGGGaaUG----UGGG-CAGCacCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.