miRNA display CGI


Results 21 - 40 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5996 5' -60.1 NC_001806.1 + 19985 0.66 0.766526
Target:  5'- uCCGAUGCgaucccgaucccgaGCCGggGCGUCGCGA-UGCc -3'
miRNA:   3'- -GGCUGCG--------------CGGCa-CGCGGCGCUcAUGc -5'
5996 5' -60.1 NC_001806.1 + 20665 0.72 0.421709
Target:  5'- cCCGGCGUGCCG-GCGUCGgGGcggggucGUGCa -3'
miRNA:   3'- -GGCUGCGCGGCaCGCGGCgCU-------CAUGc -5'
5996 5' -60.1 NC_001806.1 + 21335 0.67 0.741813
Target:  5'- gCCGGgGaCGCCGUcuCGCCGCGAcaGCu -3'
miRNA:   3'- -GGCUgC-GCGGCAc-GCGGCGCUcaUGc -5'
5996 5' -60.1 NC_001806.1 + 21491 0.67 0.732491
Target:  5'- gCCGACGcCGCCGgcgaccggGCcccggcccgggGCCGCGA--ACGg -3'
miRNA:   3'- -GGCUGC-GCGGCa-------CG-----------CGGCGCUcaUGC- -5'
5996 5' -60.1 NC_001806.1 + 21735 0.69 0.636212
Target:  5'- aCGACGCgGCCGaccaCGCaCGCGAGgcGCGg -3'
miRNA:   3'- gGCUGCG-CGGCac--GCG-GCGCUCa-UGC- -5'
5996 5' -60.1 NC_001806.1 + 21994 0.66 0.794776
Target:  5'- gCCGACGCGaccuCCG-GCGCCuucuacGCGcgcuaucgcgacgGGUACGu -3'
miRNA:   3'- -GGCUGCGC----GGCaCGCGG------CGC-------------UCAUGC- -5'
5996 5' -60.1 NC_001806.1 + 22182 0.7 0.568166
Target:  5'- cCCGGCG-GCCGUguggGCGCC-CGAGcuggGCGa -3'
miRNA:   3'- -GGCUGCgCGGCA----CGCGGcGCUCa---UGC- -5'
5996 5' -60.1 NC_001806.1 + 22640 0.76 0.269826
Target:  5'- gCGAgCGCGCgGUGC-CCGCcGGGUACGg -3'
miRNA:   3'- gGCU-GCGCGgCACGcGGCG-CUCAUGC- -5'
5996 5' -60.1 NC_001806.1 + 22766 0.76 0.275977
Target:  5'- aCGACGaCGCCGgGCGCCGCGcccAGgcCGg -3'
miRNA:   3'- gGCUGC-GCGGCaCGCGGCGC---UCauGC- -5'
5996 5' -60.1 NC_001806.1 + 22962 0.77 0.246325
Target:  5'- gCCGACGCGCCccgccUGCGCgcguggcugCGCGAGcUGCGg -3'
miRNA:   3'- -GGCUGCGCGGc----ACGCG---------GCGCUC-AUGC- -5'
5996 5' -60.1 NC_001806.1 + 23011 0.7 0.53855
Target:  5'- gCGACGCGCUGgugcucaUGCGCCugcGCGGGgaccUGCGc -3'
miRNA:   3'- gGCUGCGCGGC-------ACGCGG---CGCUC----AUGC- -5'
5996 5' -60.1 NC_001806.1 + 23073 0.75 0.295101
Target:  5'- gCCGugGcCGCCGUgcGCGCCGUGAGc--- -3'
miRNA:   3'- -GGCugC-GCGGCA--CGCGGCGCUCaugc -5'
5996 5' -60.1 NC_001806.1 + 23241 0.72 0.443037
Target:  5'- gCCGACGCGCUGgcggccgccgccgccUccgccGCGCCGCGGGagggGCGc -3'
miRNA:   3'- -GGCUGCGCGGC---------------A-----CGCGGCGCUCa---UGC- -5'
5996 5' -60.1 NC_001806.1 + 23712 0.66 0.804183
Target:  5'- aUCGcCGCGCgGUGCGCCGgGcccGCc -3'
miRNA:   3'- -GGCuGCGCGgCACGCGGCgCucaUGc -5'
5996 5' -60.1 NC_001806.1 + 24071 0.67 0.741813
Target:  5'- cCCGACGUGUCG-GCGCUggGCGcacAGgGCGu -3'
miRNA:   3'- -GGCUGCGCGGCaCGCGG--CGC---UCaUGC- -5'
5996 5' -60.1 NC_001806.1 + 24224 0.66 0.778151
Target:  5'- gCCGACGgGCCcgcgGUGUCGCGGcaGCa -3'
miRNA:   3'- -GGCUGCgCGGca--CGCGGCGCUcaUGc -5'
5996 5' -60.1 NC_001806.1 + 24281 0.7 0.539498
Target:  5'- gCCGugcagUGCGCCGUGCGCuggccggcggCGCGGGaccUGCGc -3'
miRNA:   3'- -GGCu----GCGCGGCACGCG----------GCGCUC---AUGC- -5'
5996 5' -60.1 NC_001806.1 + 24404 0.82 0.119437
Target:  5'- cCCGACGCGCCGccgcugcgccUGUGCCGCGGcggcaacGUGCGc -3'
miRNA:   3'- -GGCUGCGCGGC----------ACGCGGCGCU-------CAUGC- -5'
5996 5' -60.1 NC_001806.1 + 24507 0.68 0.684851
Target:  5'- aCCGcCGgGCCGUGCuGCCgGCGcuGG-ACGg -3'
miRNA:   3'- -GGCuGCgCGGCACG-CGG-CGC--UCaUGC- -5'
5996 5' -60.1 NC_001806.1 + 24575 0.68 0.655726
Target:  5'- cCCGGCGCGCCGgacuuCUGCGAGg--- -3'
miRNA:   3'- -GGCUGCGCGGCacgc-GGCGCUCaugc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.