miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5996 5' -60.1 NC_001806.1 + 152066 0.66 0.795638
Target:  5'- cCCGccuuuuuuGCGCGCgCGcGCGCCcGCGGGggGCc -3'
miRNA:   3'- -GGC--------UGCGCG-GCaCGCGG-CGCUCa-UGc -5'
5996 5' -60.1 NC_001806.1 + 151534 0.66 0.778151
Target:  5'- aCGGCGC-CCGUGgGCC-CGGGcgGCc -3'
miRNA:   3'- gGCUGCGcGGCACgCGGcGCUCa-UGc -5'
5996 5' -60.1 NC_001806.1 + 151440 0.66 0.795638
Target:  5'- aCCGGCgggggGCGgCGgcgggGCgGCCGCGGGcGCGc -3'
miRNA:   3'- -GGCUG-----CGCgGCa----CG-CGGCGCUCaUGC- -5'
5996 5' -60.1 NC_001806.1 + 151162 0.68 0.655726
Target:  5'- -aGGCGCGCCagGUGCuCCGCGGugACGc -3'
miRNA:   3'- ggCUGCGCGG--CACGcGGCGCUcaUGC- -5'
5996 5' -60.1 NC_001806.1 + 148083 0.66 0.786958
Target:  5'- cCCGAUggGCGCCGagggggGCGCUGUccGAGccGCGg -3'
miRNA:   3'- -GGCUG--CGCGGCa-----CGCGGCG--CUCa-UGC- -5'
5996 5' -60.1 NC_001806.1 + 147987 0.66 0.778151
Target:  5'- gCCaGACGCcccCCGcgGCGCCGCGGcucGCGa -3'
miRNA:   3'- -GG-CUGCGc--GGCa-CGCGGCGCUca-UGC- -5'
5996 5' -60.1 NC_001806.1 + 147495 0.7 0.539498
Target:  5'- -gGGCgGCGCCGgagggggcgGCGCCGCGGGaggGCc -3'
miRNA:   3'- ggCUG-CGCGGCa--------CGCGGCGCUCa--UGc -5'
5996 5' -60.1 NC_001806.1 + 146774 0.68 0.684851
Target:  5'- uCCGACGCGg---GgGCCGuCGGGUACu -3'
miRNA:   3'- -GGCUGCGCggcaCgCGGC-GCUCAUGc -5'
5996 5' -60.1 NC_001806.1 + 144573 0.66 0.778151
Target:  5'- uCCgGGCGCGuCCGgGUGCCGCGGc---- -3'
miRNA:   3'- -GG-CUGCGC-GGCaCGCGGCGCUcaugc -5'
5996 5' -60.1 NC_001806.1 + 144534 0.7 0.539498
Target:  5'- -gGGCGCgGCCGUGcCGaUCGCGGGUgguGCGa -3'
miRNA:   3'- ggCUGCG-CGGCAC-GC-GGCGCUCA---UGC- -5'
5996 5' -60.1 NC_001806.1 + 144369 0.67 0.713617
Target:  5'- -gGGCGCG-CGUGC-CCGCGAGa--- -3'
miRNA:   3'- ggCUGCGCgGCACGcGGCGCUCaugc -5'
5996 5' -60.1 NC_001806.1 + 143646 0.67 0.741813
Target:  5'- uCCGGCGCGCCGcccccCGCCGCu------ -3'
miRNA:   3'- -GGCUGCGCGGCac---GCGGCGcucaugc -5'
5996 5' -60.1 NC_001806.1 + 143108 0.69 0.625471
Target:  5'- cCCGACGCugggggcguggcuGCCGggagGgGCCGCGGauggGCGg -3'
miRNA:   3'- -GGCUGCG-------------CGGCa---CgCGGCGCUca--UGC- -5'
5996 5' -60.1 NC_001806.1 + 140688 0.67 0.732491
Target:  5'- gCGGCGC-CCGcGUGCCGCGcuGGaACGc -3'
miRNA:   3'- gGCUGCGcGGCaCGCGGCGC--UCaUGC- -5'
5996 5' -60.1 NC_001806.1 + 138773 0.67 0.729678
Target:  5'- gCCGACGCaggcgucgguaaugGCCGacgcagGCGCCcccgGCGAgcGUGCGu -3'
miRNA:   3'- -GGCUGCG--------------CGGCa-----CGCGG----CGCU--CAUGC- -5'
5996 5' -60.1 NC_001806.1 + 138402 0.67 0.751049
Target:  5'- -gGACGCGgggcaCaUGCGCUGCGAgGUGCa -3'
miRNA:   3'- ggCUGCGCg----GcACGCGGCGCU-CAUGc -5'
5996 5' -60.1 NC_001806.1 + 136370 0.66 0.804183
Target:  5'- gCCGGCGCGCUccGCGgccuCCGCGAccGUGg- -3'
miRNA:   3'- -GGCUGCGCGGcaCGC----GGCGCU--CAUgc -5'
5996 5' -60.1 NC_001806.1 + 135075 0.69 0.604987
Target:  5'- -gGACGCGCCGggccggaaaucgGCGCCGaccgggGAGggggGCGg -3'
miRNA:   3'- ggCUGCGCGGCa-----------CGCGGCg-----CUCa---UGC- -5'
5996 5' -60.1 NC_001806.1 + 133680 0.69 0.636212
Target:  5'- gCGGCGCGUCGUGCGugucugucCCG-GAG-GCGg -3'
miRNA:   3'- gGCUGCGCGGCACGC--------GGCgCUCaUGC- -5'
5996 5' -60.1 NC_001806.1 + 132170 0.66 0.769226
Target:  5'- cCCGACGCGCgGcugGCGUgggCGCGccugGCGg -3'
miRNA:   3'- -GGCUGCGCGgCa--CGCG---GCGCuca-UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.