miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5998 3' -59.8 NC_001806.1 + 104758 0.66 0.794151
Target:  5'- aCCGACGccguucUGGCUCCUcauaUCGGGGGg -3'
miRNA:   3'- gGGUUGU------ACCGGGGAcaucGGCCCCC- -5'
5998 3' -59.8 NC_001806.1 + 114976 0.66 0.794151
Target:  5'- aCCGACAUGGgcaaccuuCCCCaaaacuuuuaccUG-GGCCGcGGGGc -3'
miRNA:   3'- gGGUUGUACC--------GGGG------------ACaUCGGC-CCCC- -5'
5998 3' -59.8 NC_001806.1 + 77131 0.66 0.794151
Target:  5'- gCgGGCcgGGgCCgUGgaggAGCuCGGGGGg -3'
miRNA:   3'- gGgUUGuaCCgGGgACa---UCG-GCCCCC- -5'
5998 3' -59.8 NC_001806.1 + 20641 0.66 0.790644
Target:  5'- aCCAACGggccgcggccacgGGCCCCcGgcguGCCGGcgucGGGg -3'
miRNA:   3'- gGGUUGUa------------CCGGGGaCau--CGGCC----CCC- -5'
5998 3' -59.8 NC_001806.1 + 80561 0.66 0.785341
Target:  5'- cCCCAACcccaGCCCCaaaacgggcaUGUAGCaccCGGGGa -3'
miRNA:   3'- -GGGUUGuac-CGGGG----------ACAUCG---GCCCCc -5'
5998 3' -59.8 NC_001806.1 + 109525 0.66 0.785341
Target:  5'- cUCCAGCGa-GCUCggG-AGCCGGGGGa -3'
miRNA:   3'- -GGGUUGUacCGGGgaCaUCGGCCCCC- -5'
5998 3' -59.8 NC_001806.1 + 19914 0.66 0.776402
Target:  5'- cCCCGGgGUGcGuCCCCUGUguuucgugGGUgGGGuGGg -3'
miRNA:   3'- -GGGUUgUAC-C-GGGGACA--------UCGgCCC-CC- -5'
5998 3' -59.8 NC_001806.1 + 24692 0.66 0.776402
Target:  5'- gCCGGCccGGCCCg-GUGGCgCGGGccgcGGa -3'
miRNA:   3'- gGGUUGuaCCGGGgaCAUCG-GCCC----CC- -5'
5998 3' -59.8 NC_001806.1 + 66815 0.66 0.770981
Target:  5'- gCCgAGCGgggccGGCCCggGUGGCCGGugugcgccgccuccuGGGg -3'
miRNA:   3'- -GGgUUGUa----CCGGGgaCAUCGGCC---------------CCC- -5'
5998 3' -59.8 NC_001806.1 + 50938 0.66 0.767343
Target:  5'- cCUCAGCGccccgGGCCCCcGUGuCCGGGa- -3'
miRNA:   3'- -GGGUUGUa----CCGGGGaCAUcGGCCCcc -5'
5998 3' -59.8 NC_001806.1 + 20376 0.66 0.767343
Target:  5'- uCCCGu--UGGUCCCggcGUccggcgggcgGGaCCGGGGGg -3'
miRNA:   3'- -GGGUuguACCGGGGa--CA----------UC-GGCCCCC- -5'
5998 3' -59.8 NC_001806.1 + 63962 0.66 0.767343
Target:  5'- gCCC-GCAgGGUCgCCUuguuugugGUGGCCuGGGGGu -3'
miRNA:   3'- -GGGuUGUaCCGG-GGA--------CAUCGG-CCCCC- -5'
5998 3' -59.8 NC_001806.1 + 149578 0.66 0.767343
Target:  5'- cCCUAACAUGGCgcccccgguCCCUGUauauauAGUgucaCGGGGu -3'
miRNA:   3'- -GGGUUGUACCG---------GGGACA------UCG----GCCCCc -5'
5998 3' -59.8 NC_001806.1 + 20711 0.66 0.758172
Target:  5'- uUCGGgGUGGgCCC----GCCGGGGGg -3'
miRNA:   3'- gGGUUgUACCgGGGacauCGGCCCCC- -5'
5998 3' -59.8 NC_001806.1 + 72532 0.66 0.758172
Target:  5'- gUCGGCGUGgGCCCCcgGgagggGGuaGGGGGc -3'
miRNA:   3'- gGGUUGUAC-CGGGGa-Ca----UCggCCCCC- -5'
5998 3' -59.8 NC_001806.1 + 48364 0.66 0.758172
Target:  5'- gUCGAC--GGCCCCcccgaccgaUGUcAGCCuGGGGGa -3'
miRNA:   3'- gGGUUGuaCCGGGG---------ACA-UCGG-CCCCC- -5'
5998 3' -59.8 NC_001806.1 + 73497 0.66 0.748897
Target:  5'- aCCCugAACAUGcugCCCUGgaaaacGGCCGuGGGGg -3'
miRNA:   3'- -GGG--UUGUACcg-GGGACa-----UCGGC-CCCC- -5'
5998 3' -59.8 NC_001806.1 + 114845 0.66 0.748897
Target:  5'- gCCAGCuccagGUGGCCCg-GcacgaaacUGGCgGGGGGg -3'
miRNA:   3'- gGGUUG-----UACCGGGgaC--------AUCGgCCCCC- -5'
5998 3' -59.8 NC_001806.1 + 6640 0.66 0.748897
Target:  5'- aCCGuuGCGUGGaCCgcuuCCUGcucGUCGGGGGg -3'
miRNA:   3'- gGGU--UGUACC-GG----GGACau-CGGCCCCC- -5'
5998 3' -59.8 NC_001806.1 + 59974 0.66 0.748897
Target:  5'- gCCGGCGcggcaccucucUGGCCUCgg-GGacCCGGGGGa -3'
miRNA:   3'- gGGUUGU-----------ACCGGGGacaUC--GGCCCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.