miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6001 5' -58.1 NC_001806.1 + 30032 0.66 0.849363
Target:  5'- aGGc-GGGGcGGCCGaggggCCGGACGGg- -3'
miRNA:   3'- aCCauCUCCuCCGGCa----GGCCUGCUag -5'
6001 5' -58.1 NC_001806.1 + 33817 0.66 0.849363
Target:  5'- gGGUGGAcucgcgGGGGGCCGgagGGugGAa- -3'
miRNA:   3'- aCCAUCU------CCUCCGGCaggCCugCUag -5'
6001 5' -58.1 NC_001806.1 + 100616 0.66 0.849363
Target:  5'- --cUGGAGGuAGGUgUGUCCGG-CGAUCc -3'
miRNA:   3'- accAUCUCC-UCCG-GCAGGCCuGCUAG- -5'
6001 5' -58.1 NC_001806.1 + 147270 0.66 0.841473
Target:  5'- aGGaAGAggcGGAGGCCG-CCgaGGACG-UCa -3'
miRNA:   3'- aCCaUCU---CCUCCGGCaGG--CCUGCuAG- -5'
6001 5' -58.1 NC_001806.1 + 41873 0.66 0.833399
Target:  5'- aGGUAGGccuuGGCCGuaucgccaUCCaGGACGGUCu -3'
miRNA:   3'- aCCAUCUccu-CCGGC--------AGG-CCUGCUAG- -5'
6001 5' -58.1 NC_001806.1 + 15055 0.66 0.825149
Target:  5'- aUGGUGGGGGGuGUC-UUCGGGCGAc- -3'
miRNA:   3'- -ACCAUCUCCUcCGGcAGGCCUGCUag -5'
6001 5' -58.1 NC_001806.1 + 34405 0.66 0.825149
Target:  5'- cGGUGGccGGGccGGGCCGggCCGGGcCGGg- -3'
miRNA:   3'- aCCAUC--UCC--UCCGGCa-GGCCU-GCUag -5'
6001 5' -58.1 NC_001806.1 + 11818 0.66 0.825149
Target:  5'- gGGUGGAGGuGGUgGUCgagggGGugGAg- -3'
miRNA:   3'- aCCAUCUCCuCCGgCAGg----CCugCUag -5'
6001 5' -58.1 NC_001806.1 + 76910 0.66 0.808147
Target:  5'- aGGUcucucGAGGAGGCCGaggcggagUgGGACGAg- -3'
miRNA:   3'- aCCAu----CUCCUCCGGCa-------GgCCUGCUag -5'
6001 5' -58.1 NC_001806.1 + 22142 0.68 0.744222
Target:  5'- aGGcGGAGGAGGCgCGacgCCGGuuCGAg- -3'
miRNA:   3'- aCCaUCUCCUCCG-GCa--GGCCu-GCUag -5'
6001 5' -58.1 NC_001806.1 + 75212 0.68 0.734641
Target:  5'- cGGUGGAuGcGGCCGUgCGGGCGc-- -3'
miRNA:   3'- aCCAUCUcCuCCGGCAgGCCUGCuag -5'
6001 5' -58.1 NC_001806.1 + 48598 0.68 0.734641
Target:  5'- cGGUGGguAGGGGGCgCGaCCGGACc--- -3'
miRNA:   3'- aCCAUC--UCCUCCG-GCaGGCCUGcuag -5'
6001 5' -58.1 NC_001806.1 + 34309 0.68 0.724975
Target:  5'- cGGcGGGGGGcGGCgCG-CCGGACGGg- -3'
miRNA:   3'- aCCaUCUCCU-CCG-GCaGGCCUGCUag -5'
6001 5' -58.1 NC_001806.1 + 151278 0.68 0.724975
Target:  5'- cGGUGGGGGccgGGGCCGgg-GGGCGGc- -3'
miRNA:   3'- aCCAUCUCC---UCCGGCaggCCUGCUag -5'
6001 5' -58.1 NC_001806.1 + 63342 0.68 0.715231
Target:  5'- cUGGaucgcuuGGAGGCCGgaUGGACGAUCu -3'
miRNA:   3'- -ACCaucu---CCUCCGGCagGCCUGCUAG- -5'
6001 5' -58.1 NC_001806.1 + 99737 0.68 0.705418
Target:  5'- gUGGUGGGGGGcgauacacGGCC-UCCGGGgGAc- -3'
miRNA:   3'- -ACCAUCUCCU--------CCGGcAGGCCUgCUag -5'
6001 5' -58.1 NC_001806.1 + 33647 0.69 0.65563
Target:  5'- cGGgcgGGGGGGGGgUGUCgCGGGCcGUCu -3'
miRNA:   3'- aCCa--UCUCCUCCgGCAG-GCCUGcUAG- -5'
6001 5' -58.1 NC_001806.1 + 31371 0.69 0.645585
Target:  5'- gGGaGGGGGGGGUCGggcgCUGGGUGGUCu -3'
miRNA:   3'- aCCaUCUCCUCCGGCa---GGCCUGCUAG- -5'
6001 5' -58.1 NC_001806.1 + 65321 0.7 0.63553
Target:  5'- cGGUGG-GGAcgucGGCCGUCUGGGuacCGGUa -3'
miRNA:   3'- aCCAUCuCCU----CCGGCAGGCCU---GCUAg -5'
6001 5' -58.1 NC_001806.1 + 71926 0.7 0.625473
Target:  5'- uUGGUcGAGGGGGgCGagUGGACGcgCg -3'
miRNA:   3'- -ACCAuCUCCUCCgGCagGCCUGCuaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.