miRNA display CGI


Results 1 - 20 of 212 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6002 3' -63.4 NC_001806.1 + 22199 1.13 0.000353
Target:  5'- cGCCCGAGCUGGGCGACGCCGCGCAGCa -3'
miRNA:   3'- -CGGGCUCGACCCGCUGCGGCGCGUCG- -5'
6002 3' -63.4 NC_001806.1 + 78330 0.83 0.048008
Target:  5'- cCCCGAGCUGGgaaccgagcGCGGCGCCGCGCugggaaAGCu -3'
miRNA:   3'- cGGGCUCGACC---------CGCUGCGGCGCG------UCG- -5'
6002 3' -63.4 NC_001806.1 + 151546 0.81 0.070497
Target:  5'- gGCCCGGGCggccggGGGCGGCggggGCCGCgaugGCGGCg -3'
miRNA:   3'- -CGGGCUCGa-----CCCGCUG----CGGCG----CGUCG- -5'
6002 3' -63.4 NC_001806.1 + 4432 0.8 0.080037
Target:  5'- gGCCCGGGCggGGGCGGCGuCCGCcCGGg -3'
miRNA:   3'- -CGGGCUCGa-CCCGCUGC-GGCGcGUCg -5'
6002 3' -63.4 NC_001806.1 + 24629 0.8 0.086341
Target:  5'- cGCUgGGGcCUGGGCG-CGCCGCuGCGGCc -3'
miRNA:   3'- -CGGgCUC-GACCCGCuGCGGCG-CGUCG- -5'
6002 3' -63.4 NC_001806.1 + 1425 0.79 0.100393
Target:  5'- gGCCC-AGCgaaucccGGGCGGCGCCG-GCGGCa -3'
miRNA:   3'- -CGGGcUCGa------CCCGCUGCGGCgCGUCG- -5'
6002 3' -63.4 NC_001806.1 + 2513 0.78 0.108204
Target:  5'- gGCCUGGGCggcggGGGCGggcccgGCGCacCGCGCGGCg -3'
miRNA:   3'- -CGGGCUCGa----CCCGC------UGCG--GCGCGUCG- -5'
6002 3' -63.4 NC_001806.1 + 147501 0.77 0.135181
Target:  5'- cGCCgGAGg-GGGCGGCGCCGCGggagGGCc -3'
miRNA:   3'- -CGGgCUCgaCCCGCUGCGGCGCg---UCG- -5'
6002 3' -63.4 NC_001806.1 + 25915 0.76 0.145472
Target:  5'- gGUCCGGGC--GGCGuGCGCgCGCGCGGCg -3'
miRNA:   3'- -CGGGCUCGacCCGC-UGCG-GCGCGUCG- -5'
6002 3' -63.4 NC_001806.1 + 2878 0.76 0.145472
Target:  5'- cGUCCGAGCcGGG-GGCGuCCGCGCcGCu -3'
miRNA:   3'- -CGGGCUCGaCCCgCUGC-GGCGCGuCG- -5'
6002 3' -63.4 NC_001806.1 + 50643 0.76 0.152725
Target:  5'- cGCCCGGGCgugcgGGGacgcgcacCGGCGCCGggacgaCGCGGCg -3'
miRNA:   3'- -CGGGCUCGa----CCC--------GCUGCGGC------GCGUCG- -5'
6002 3' -63.4 NC_001806.1 + 103799 0.76 0.152725
Target:  5'- cCCCGGGC--GGCGcCGCCGCgGCGGCg -3'
miRNA:   3'- cGGGCUCGacCCGCuGCGGCG-CGUCG- -5'
6002 3' -63.4 NC_001806.1 + 22117 0.76 0.156474
Target:  5'- cGCCCGGGCcucUGGGgGGCGCC-CGaGGCg -3'
miRNA:   3'- -CGGGCUCG---ACCCgCUGCGGcGCgUCG- -5'
6002 3' -63.4 NC_001806.1 + 85892 0.76 0.164221
Target:  5'- aGUCCGuGUUcaGGGCGACGCCGUG-GGCa -3'
miRNA:   3'- -CGGGCuCGA--CCCGCUGCGGCGCgUCG- -5'
6002 3' -63.4 NC_001806.1 + 35137 0.75 0.168222
Target:  5'- gGCCCucGGUUGGGCGACGCaUGC-CAGCc -3'
miRNA:   3'- -CGGGc-UCGACCCGCUGCG-GCGcGUCG- -5'
6002 3' -63.4 NC_001806.1 + 25867 0.75 0.168222
Target:  5'- aGCCCGGGCcccccgcGGGCG-CGCgCGCGC-GCa -3'
miRNA:   3'- -CGGGCUCGa------CCCGCuGCG-GCGCGuCG- -5'
6002 3' -63.4 NC_001806.1 + 2801 0.75 0.185114
Target:  5'- cGCCgCGGGCUGGGCGGgGgCGgGCucgGGCc -3'
miRNA:   3'- -CGG-GCUCGACCCGCUgCgGCgCG---UCG- -5'
6002 3' -63.4 NC_001806.1 + 24822 0.75 0.185114
Target:  5'- cGCCCGGgauucGCUGGGCcucGGCcacggGCCGCaGCGGCa -3'
miRNA:   3'- -CGGGCU-----CGACCCG---CUG-----CGGCG-CGUCG- -5'
6002 3' -63.4 NC_001806.1 + 2767 0.74 0.208317
Target:  5'- gGCgCGGGC-GGGCcuGCGCCGCgGCGGCc -3'
miRNA:   3'- -CGgGCUCGaCCCGc-UGCGGCG-CGUCG- -5'
6002 3' -63.4 NC_001806.1 + 147787 0.74 0.212752
Target:  5'- gGCCCgGGGCgggGGGCGgagccuggcauggGCGCCGCGgGGg -3'
miRNA:   3'- -CGGG-CUCGa--CCCGC-------------UGCGGCGCgUCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.