miRNA display CGI


Results 21 - 40 of 212 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6002 3' -63.4 NC_001806.1 + 89517 0.74 0.218282
Target:  5'- aUCCGGGC--GGCGAgcUGCUGCGCGGCg -3'
miRNA:   3'- cGGGCUCGacCCGCU--GCGGCGCGUCG- -5'
6002 3' -63.4 NC_001806.1 + 4741 0.73 0.23399
Target:  5'- cCCCGGGCcgGGGCccgguCGCCG-GCGGCg -3'
miRNA:   3'- cGGGCUCGa-CCCGcu---GCGGCgCGUCG- -5'
6002 3' -63.4 NC_001806.1 + 151491 0.73 0.238884
Target:  5'- uUCCGAGUUGGGCGugGagguuaccugggaCUGUGCGGUu -3'
miRNA:   3'- cGGGCUCGACCCGCugC-------------GGCGCGUCG- -5'
6002 3' -63.4 NC_001806.1 + 1461 0.73 0.244982
Target:  5'- cCCCGGGCcgucGuCGuCGCCGCGCAGCa -3'
miRNA:   3'- cGGGCUCGacc-C-GCuGCGGCGCGUCG- -5'
6002 3' -63.4 NC_001806.1 + 67041 0.73 0.244982
Target:  5'- gGCCCGuaccGCaucGGCGGCGUCGCGC-GCg -3'
miRNA:   3'- -CGGGCu---CGac-CCGCUGCGGCGCGuCG- -5'
6002 3' -63.4 NC_001806.1 + 44282 0.73 0.250637
Target:  5'- cGCCCccgcaaccagGAGCUGGGCGAC-CUugGCGcCGGCc -3'
miRNA:   3'- -CGGG----------CUCGACCCGCUGcGG--CGC-GUCG- -5'
6002 3' -63.4 NC_001806.1 + 76371 0.73 0.255818
Target:  5'- uGCCCGAGCgaggacgcgcuggUGGcguGCGugGCgGCGCuggAGCg -3'
miRNA:   3'- -CGGGCUCG-------------ACC---CGCugCGgCGCG---UCG- -5'
6002 3' -63.4 NC_001806.1 + 134237 0.73 0.256399
Target:  5'- aGUCgGAGCggggGGGCGGCcCCG-GCAGCc -3'
miRNA:   3'- -CGGgCUCGa---CCCGCUGcGGCgCGUCG- -5'
6002 3' -63.4 NC_001806.1 + 50201 0.72 0.26227
Target:  5'- gGCCCGGggugcgcgcgcuGCUGGaccGCGACuGUCGCGUGGCc -3'
miRNA:   3'- -CGGGCU------------CGACC---CGCUG-CGGCGCGUCG- -5'
6002 3' -63.4 NC_001806.1 + 86083 0.72 0.274338
Target:  5'- aGCUCGcGgaGGGCGGCcaGCCGCGCGa- -3'
miRNA:   3'- -CGGGCuCgaCCCGCUG--CGGCGCGUcg -5'
6002 3' -63.4 NC_001806.1 + 5083 0.72 0.274338
Target:  5'- gGCUCGGGgUGGGCGGCGgCC-CGuCGGUg -3'
miRNA:   3'- -CGGGCUCgACCCGCUGC-GGcGC-GUCG- -5'
6002 3' -63.4 NC_001806.1 + 119019 0.72 0.274338
Target:  5'- aCCCGuacGCcGuGGCGGCGCUGCGCcuuGCg -3'
miRNA:   3'- cGGGCu--CGaC-CCGCUGCGGCGCGu--CG- -5'
6002 3' -63.4 NC_001806.1 + 113751 0.72 0.274338
Target:  5'- gGCCCgGAGCUGGGCGG-GCaGgGCAaGCc -3'
miRNA:   3'- -CGGG-CUCGACCCGCUgCGgCgCGU-CG- -5'
6002 3' -63.4 NC_001806.1 + 106531 0.72 0.274338
Target:  5'- aGCUgGuGCUcgGGuGCGAUGCCGCGCugguGCg -3'
miRNA:   3'- -CGGgCuCGA--CC-CGCUGCGGCGCGu---CG- -5'
6002 3' -63.4 NC_001806.1 + 23569 0.72 0.280536
Target:  5'- gGCCC-AGCcacacGGCGGCGCC-CGCGGCc -3'
miRNA:   3'- -CGGGcUCGac---CCGCUGCGGcGCGUCG- -5'
6002 3' -63.4 NC_001806.1 + 50877 0.72 0.286846
Target:  5'- cCCCGccaAGUucUGGGCgGACuCCGCGCGGCc -3'
miRNA:   3'- cGGGC---UCG--ACCCG-CUGcGGCGCGUCG- -5'
6002 3' -63.4 NC_001806.1 + 132727 0.72 0.293267
Target:  5'- cCCgCGAGCUGgcccGGCGugGCCucgGCgGCAGCc -3'
miRNA:   3'- cGG-GCUCGAC----CCGCugCGG---CG-CGUCG- -5'
6002 3' -63.4 NC_001806.1 + 98842 0.72 0.293267
Target:  5'- cGUCCGGGgaGGGCGAgGa-GgGCGGCg -3'
miRNA:   3'- -CGGGCUCgaCCCGCUgCggCgCGUCG- -5'
6002 3' -63.4 NC_001806.1 + 66860 0.72 0.293267
Target:  5'- gGCCCGGGCacacgGcGGUGACGCuCGC-UAGCu -3'
miRNA:   3'- -CGGGCUCGa----C-CCGCUGCG-GCGcGUCG- -5'
6002 3' -63.4 NC_001806.1 + 151435 0.72 0.293267
Target:  5'- gGCCCaccGGCgggGGGCGGCgGCgGgGCGGCc -3'
miRNA:   3'- -CGGGc--UCGa--CCCGCUG-CGgCgCGUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.