miRNA display CGI


Results 21 - 40 of 212 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6002 3' -63.4 NC_001806.1 + 4338 0.7 0.371282
Target:  5'- cGCgCGGGCccGGCGGCGCuCGaUGCGGCc -3'
miRNA:   3'- -CGgGCUCGacCCGCUGCG-GC-GCGUCG- -5'
6002 3' -63.4 NC_001806.1 + 4432 0.8 0.080037
Target:  5'- gGCCCGGGCggGGGCGGCGuCCGCcCGGg -3'
miRNA:   3'- -CGGGCUCGa-CCCGCUGC-GGCGcGUCg -5'
6002 3' -63.4 NC_001806.1 + 4654 0.7 0.37904
Target:  5'- cUCCGcggcGGCUGGGcCGGCGg-GCGCGGCg -3'
miRNA:   3'- cGGGC----UCGACCC-GCUGCggCGCGUCG- -5'
6002 3' -63.4 NC_001806.1 + 4691 0.67 0.54474
Target:  5'- gGUCCGug--GGGUccggauacGCGCCGCGUAGCg -3'
miRNA:   3'- -CGGGCucgaCCCGc-------UGCGGCGCGUCG- -5'
6002 3' -63.4 NC_001806.1 + 4741 0.73 0.23399
Target:  5'- cCCCGGGCcgGGGCccgguCGCCG-GCGGCg -3'
miRNA:   3'- cGGGCUCGa-CCCGcu---GCGGCgCGUCG- -5'
6002 3' -63.4 NC_001806.1 + 4824 0.69 0.394878
Target:  5'- gGUCCGGGgc-GGCGAgGCCGCGgGGUc -3'
miRNA:   3'- -CGGGCUCgacCCGCUgCGGCGCgUCG- -5'
6002 3' -63.4 NC_001806.1 + 5083 0.72 0.274338
Target:  5'- gGCUCGGGgUGGGCGGCGgCC-CGuCGGUg -3'
miRNA:   3'- -CGGGCUCgACCCGCUGC-GGcGC-GUCG- -5'
6002 3' -63.4 NC_001806.1 + 5154 0.68 0.486398
Target:  5'- -gCCGAuGCgGGGCGAUccuccggggauacgGCUGCGaCGGCg -3'
miRNA:   3'- cgGGCU-CGaCCCGCUG--------------CGGCGC-GUCG- -5'
6002 3' -63.4 NC_001806.1 + 6057 0.67 0.49821
Target:  5'- uGCCCGAcuccgcgccgGCcccggGGGCgGGC-CCGgGCGGCg -3'
miRNA:   3'- -CGGGCU----------CGa----CCCG-CUGcGGCgCGUCG- -5'
6002 3' -63.4 NC_001806.1 + 7807 0.66 0.563756
Target:  5'- gGCCau-GUUGGGC--CGCCacGCGCGGCu -3'
miRNA:   3'- -CGGgcuCGACCCGcuGCGG--CGCGUCG- -5'
6002 3' -63.4 NC_001806.1 + 8717 0.7 0.356095
Target:  5'- gGCCaCGAGgaGacaGGCGAucaccaUGCCGaCGCAGCg -3'
miRNA:   3'- -CGG-GCUCgaC---CCGCU------GCGGC-GCGUCG- -5'
6002 3' -63.4 NC_001806.1 + 9188 0.69 0.411138
Target:  5'- aGCCCGGGggucgcGGGUGugGCgaggGCGCGGUc -3'
miRNA:   3'- -CGGGCUCga----CCCGCugCGg---CGCGUCG- -5'
6002 3' -63.4 NC_001806.1 + 9792 0.67 0.50187
Target:  5'- cCCCGAcguGCgggUGGGUGggcucggccaaauccGCGCCGCGCuGUg -3'
miRNA:   3'- cGGGCU---CG---ACCCGC---------------UGCGGCGCGuCG- -5'
6002 3' -63.4 NC_001806.1 + 12154 0.68 0.489113
Target:  5'- uGCCaCG-GCgGGGCGACGUgGgcaCGCGGUc -3'
miRNA:   3'- -CGG-GCuCGaCCCGCUGCGgC---GCGUCG- -5'
6002 3' -63.4 NC_001806.1 + 15706 0.67 0.49821
Target:  5'- gGCCgguCGGGUguacggcGGGCGAUuguucccgGCCGCGCGGg -3'
miRNA:   3'- -CGG---GCUCGa------CCCGCUG--------CGGCGCGUCg -5'
6002 3' -63.4 NC_001806.1 + 16476 0.66 0.563756
Target:  5'- gGCCaugguCGAGggGGGCu-UGCCGCcGCGGCu -3'
miRNA:   3'- -CGG-----GCUCgaCCCGcuGCGGCG-CGUCG- -5'
6002 3' -63.4 NC_001806.1 + 17825 0.66 0.582944
Target:  5'- uGCCCGAGUggaccGuGGCGugGaccCCGUuccccGCGGCc -3'
miRNA:   3'- -CGGGCUCGa----C-CCGCugC---GGCG-----CGUCG- -5'
6002 3' -63.4 NC_001806.1 + 19521 0.69 0.434585
Target:  5'- uGCCCagGGGCgGGGaucggagagcggGACGCCGCGCuuuuacacaaGGCg -3'
miRNA:   3'- -CGGG--CUCGaCCCg-----------CUGCGGCGCG----------UCG- -5'
6002 3' -63.4 NC_001806.1 + 20001 0.7 0.371282
Target:  5'- uCCCGAGCcgGGGCgucgcGAUGCCGaCGCcGUc -3'
miRNA:   3'- cGGGCUCGa-CCCG-----CUGCGGC-GCGuCG- -5'
6002 3' -63.4 NC_001806.1 + 20170 0.67 0.54474
Target:  5'- cGCCCGGGCccgcccccgGGGcCGGCGCggaguCGgGCAcgGCg -3'
miRNA:   3'- -CGGGCUCGa--------CCC-GCUGCG-----GCgCGU--CG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.