miRNA display CGI


Results 1 - 20 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6002 3' -63.4 NC_001806.1 + 1425 0.79 0.100393
Target:  5'- gGCCC-AGCgaaucccGGGCGGCGCCG-GCGGCa -3'
miRNA:   3'- -CGGGcUCGa------CCCGCUGCGGCgCGUCG- -5'
6002 3' -63.4 NC_001806.1 + 1461 0.73 0.244982
Target:  5'- cCCCGGGCcgucGuCGuCGCCGCGCAGCa -3'
miRNA:   3'- cGGGCUCGacc-C-GCuGCGGCGCGUCG- -5'
6002 3' -63.4 NC_001806.1 + 1559 0.68 0.471156
Target:  5'- -aCCGGGCcGGGcCGGCGCgcaccgccuCGCGCcccAGCg -3'
miRNA:   3'- cgGGCUCGaCCC-GCUGCG---------GCGCG---UCG- -5'
6002 3' -63.4 NC_001806.1 + 1919 0.66 0.563756
Target:  5'- gGCCCGAgGCcagcaccgUGcGGCGcaggucccGCGCCGC-CGGCc -3'
miRNA:   3'- -CGGGCU-CG--------AC-CCGC--------UGCGGCGcGUCG- -5'
6002 3' -63.4 NC_001806.1 + 2513 0.78 0.108204
Target:  5'- gGCCUGGGCggcggGGGCGggcccgGCGCacCGCGCGGCg -3'
miRNA:   3'- -CGGGCUCGa----CCCGC------UGCG--GCGCGUCG- -5'
6002 3' -63.4 NC_001806.1 + 2617 0.66 0.61195
Target:  5'- gGUCCguGAGCUcGGCcACGgCGCGCGGg -3'
miRNA:   3'- -CGGG--CUCGAcCCGcUGCgGCGCGUCg -5'
6002 3' -63.4 NC_001806.1 + 2654 0.71 0.306444
Target:  5'- gGCCUccaGGGCggcggccgcGGGCGcCGCCGUGUGGCu -3'
miRNA:   3'- -CGGG---CUCGa--------CCCGCuGCGGCGCGUCG- -5'
6002 3' -63.4 NC_001806.1 + 2767 0.74 0.208317
Target:  5'- gGCgCGGGC-GGGCcuGCGCCGCgGCGGCc -3'
miRNA:   3'- -CGgGCUCGaCCCGc-UGCGGCG-CGUCG- -5'
6002 3' -63.4 NC_001806.1 + 2801 0.75 0.185114
Target:  5'- cGCCgCGGGCUGGGCGGgGgCGgGCucgGGCc -3'
miRNA:   3'- -CGG-GCUCGACCCGCUgCgGCgCG---UCG- -5'
6002 3' -63.4 NC_001806.1 + 2878 0.76 0.145472
Target:  5'- cGUCCGAGCcGGG-GGCGuCCGCGCcGCu -3'
miRNA:   3'- -CGGGCUCGaCCCgCUGC-GGCGCGuCG- -5'
6002 3' -63.4 NC_001806.1 + 2988 0.68 0.453541
Target:  5'- gGCgCGGGgaGgcGGCGGCgGCCGC-CAGCg -3'
miRNA:   3'- -CGgGCUCgaC--CCGCUG-CGGCGcGUCG- -5'
6002 3' -63.4 NC_001806.1 + 3027 0.7 0.356095
Target:  5'- cGUCCGGugcGCUGGcCGcCGCCGC-CAGCa -3'
miRNA:   3'- -CGGGCU---CGACCcGCuGCGGCGcGUCG- -5'
6002 3' -63.4 NC_001806.1 + 3087 0.7 0.386906
Target:  5'- gGUCCGcGGC--GGCGGCgGCCGCGgAGCu -3'
miRNA:   3'- -CGGGC-UCGacCCGCUG-CGGCGCgUCG- -5'
6002 3' -63.4 NC_001806.1 + 3280 0.68 0.462304
Target:  5'- cGCgCGcaGGCgGGGCGcguCGgCGUGCGGCg -3'
miRNA:   3'- -CGgGC--UCGaCCCGCu--GCgGCGCGUCG- -5'
6002 3' -63.4 NC_001806.1 + 3485 0.67 0.525936
Target:  5'- cGCCCGgcgucgucgucGGCgucGGCGugGCgG-GCGGCg -3'
miRNA:   3'- -CGGGC-----------UCGac-CCGCugCGgCgCGUCG- -5'
6002 3' -63.4 NC_001806.1 + 3624 0.7 0.34135
Target:  5'- cGCCCGGuGCgGcGGCGGCGaCG-GCGGCg -3'
miRNA:   3'- -CGGGCU-CGaC-CCGCUGCgGCgCGUCG- -5'
6002 3' -63.4 NC_001806.1 + 4018 0.7 0.37904
Target:  5'- aGCCgCGuGaucaGGGCGuACuGCUGCGCGGCg -3'
miRNA:   3'- -CGG-GCuCga--CCCGC-UG-CGGCGCGUCG- -5'
6002 3' -63.4 NC_001806.1 + 4052 0.67 0.507382
Target:  5'- cGCCC-AGCUcGGGCGcccacACgGCCGcCGgGGCg -3'
miRNA:   3'- -CGGGcUCGA-CCCGC-----UG-CGGC-GCgUCG- -5'
6002 3' -63.4 NC_001806.1 + 4119 0.66 0.602259
Target:  5'- cGCCuCGGGCgccccccagaggcccGGGCGGCugucgcccaggccGCCGUaCAGCa -3'
miRNA:   3'- -CGG-GCUCGa--------------CCCGCUG-------------CGGCGcGUCG- -5'
6002 3' -63.4 NC_001806.1 + 4177 0.71 0.313201
Target:  5'- cGCCCcggGGGCggGGGCccGGCGCCGgGCcacGGCu -3'
miRNA:   3'- -CGGG---CUCGa-CCCG--CUGCGGCgCG---UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.