miRNA display CGI


Results 1 - 20 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6002 3' -63.4 NC_001806.1 + 151701 0.67 0.523136
Target:  5'- gGCCCGGGCUGcccGCcGCcaccgcuuuaaaggGCCGCGC-GCg -3'
miRNA:   3'- -CGGGCUCGACc--CGcUG--------------CGGCGCGuCG- -5'
6002 3' -63.4 NC_001806.1 + 151546 0.81 0.070497
Target:  5'- gGCCCGGGCggccggGGGCGGCggggGCCGCgaugGCGGCg -3'
miRNA:   3'- -CGGGCUCGa-----CCCGCUG----CGGCG----CGUCG- -5'
6002 3' -63.4 NC_001806.1 + 151491 0.73 0.238884
Target:  5'- uUCCGAGUUGGGCGugGagguuaccugggaCUGUGCGGUu -3'
miRNA:   3'- cGGGCUCGACCCGCugC-------------GGCGCGUCG- -5'
6002 3' -63.4 NC_001806.1 + 151435 0.72 0.293267
Target:  5'- gGCCCaccGGCgggGGGCGGCgGCgGgGCGGCc -3'
miRNA:   3'- -CGGGc--UCGa--CCCGCUG-CGgCgCGUCG- -5'
6002 3' -63.4 NC_001806.1 + 151285 0.69 0.427806
Target:  5'- gGCCgGGGCcGGGgGGCGgCG-GCGGUg -3'
miRNA:   3'- -CGGgCUCGaCCCgCUGCgGCgCGUCG- -5'
6002 3' -63.4 NC_001806.1 + 150659 0.68 0.489113
Target:  5'- cGCUgGuuGGCcGGGCccCGCCGCGCuGGCg -3'
miRNA:   3'- -CGGgC--UCGaCCCGcuGCGGCGCG-UCG- -5'
6002 3' -63.4 NC_001806.1 + 148148 0.67 0.525002
Target:  5'- cGCCCGucacggggGGC-GcGGCGGCGCCucugcguggggggGCGCGGg -3'
miRNA:   3'- -CGGGC--------UCGaC-CCGCUGCGG-------------CGCGUCg -5'
6002 3' -63.4 NC_001806.1 + 148081 0.69 0.426963
Target:  5'- gGCCCGAuggGCgccgaGGGgGGCGCUGUccgagccGCGGCc -3'
miRNA:   3'- -CGGGCU---CGa----CCCgCUGCGGCG-------CGUCG- -5'
6002 3' -63.4 NC_001806.1 + 147977 0.67 0.554224
Target:  5'- cCCCGGag-GGGCcaGACGCCcccCGCGGCg -3'
miRNA:   3'- cGGGCUcgaCCCG--CUGCGGc--GCGUCG- -5'
6002 3' -63.4 NC_001806.1 + 147787 0.74 0.212752
Target:  5'- gGCCCgGGGCgggGGGCGgagccuggcauggGCGCCGCGgGGg -3'
miRNA:   3'- -CGGG-CUCGa--CCCGC-------------UGCGGCGCgUCg -5'
6002 3' -63.4 NC_001806.1 + 147720 0.67 0.54474
Target:  5'- cGCUCGcacGCacgGGGCcACgGCCGCGCGGg -3'
miRNA:   3'- -CGGGCu--CGa--CCCGcUG-CGGCGCGUCg -5'
6002 3' -63.4 NC_001806.1 + 147501 0.77 0.135181
Target:  5'- cGCCgGAGg-GGGCGGCGCCGCGggagGGCc -3'
miRNA:   3'- -CGGgCUCgaCCCGCUGCGGCGCg---UCG- -5'
6002 3' -63.4 NC_001806.1 + 146086 0.69 0.394878
Target:  5'- aGUCCGGGC-GGGCaGGCGCU-CGCGGa -3'
miRNA:   3'- -CGGGCUCGaCCCG-CUGCGGcGCGUCg -5'
6002 3' -63.4 NC_001806.1 + 144810 0.67 0.54474
Target:  5'- gGCCCGGGaCgagGGGCcccCGaCCGCgGCGGUc -3'
miRNA:   3'- -CGGGCUC-Ga--CCCGcu-GC-GGCG-CGUCG- -5'
6002 3' -63.4 NC_001806.1 + 143107 0.71 0.313201
Target:  5'- aCCCGAcGCUggGGGCGugGCUGC-CGGg -3'
miRNA:   3'- cGGGCU-CGA--CCCGCugCGGCGcGUCg -5'
6002 3' -63.4 NC_001806.1 + 142174 0.67 0.554224
Target:  5'- gGUCCGAcGUggcgaugaUGGGCGGCGgCGUGguGa -3'
miRNA:   3'- -CGGGCU-CG--------ACCCGCUGCgGCGCguCg -5'
6002 3' -63.4 NC_001806.1 + 140612 0.66 0.567581
Target:  5'- aCCCGaAGCUGcucucgcacucgagcGGCGugGgCGCGUuuGCa -3'
miRNA:   3'- cGGGC-UCGAC---------------CCGCugCgGCGCGu-CG- -5'
6002 3' -63.4 NC_001806.1 + 139096 0.67 0.543794
Target:  5'- uCCgGGGCUGcgagaugcugaccGGCu-CGCCGCGCGGg -3'
miRNA:   3'- cGGgCUCGAC-------------CCGcuGCGGCGCGUCg -5'
6002 3' -63.4 NC_001806.1 + 137840 0.69 0.394878
Target:  5'- gGCCCGuGUUGGuGUGugugggcuCGCCGaCGCAGa -3'
miRNA:   3'- -CGGGCuCGACC-CGCu-------GCGGC-GCGUCg -5'
6002 3' -63.4 NC_001806.1 + 137680 0.67 0.49821
Target:  5'- gGCCCcGGCcacccacgGGGCGcUGCCGgccuuuaccCGCAGCa -3'
miRNA:   3'- -CGGGcUCGa-------CCCGCuGCGGC---------GCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.