miRNA display CGI


Results 21 - 40 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6002 3' -63.4 NC_001806.1 + 120103 0.66 0.581981
Target:  5'- cUCCGGGCccUGGGCcaGGCcauccggGCCGCGCuucagGGCg -3'
miRNA:   3'- cGGGCUCG--ACCCG--CUG-------CGGCGCG-----UCG- -5'
6002 3' -63.4 NC_001806.1 + 57895 0.66 0.577172
Target:  5'- cCCCGAGCgcccccgcuuggucgUGGGaguGAC-CCGCGUGGUc -3'
miRNA:   3'- cGGGCUCG---------------ACCCg--CUGcGGCGCGUCG- -5'
6002 3' -63.4 NC_001806.1 + 58476 0.66 0.574291
Target:  5'- cCCCGAGCucgaacguggUGGGCGugGCacuaucggccccgguCGCGUuaaggaccuuggugAGCu -3'
miRNA:   3'- cGGGCUCG----------ACCCGCugCG---------------GCGCG--------------UCG- -5'
6002 3' -63.4 NC_001806.1 + 81061 0.66 0.573331
Target:  5'- cGCCgGGcGCUGcuucaucacaGCGACGCCGUGCugaccAGCc -3'
miRNA:   3'- -CGGgCU-CGACc---------CGCUGCGGCGCG-----UCG- -5'
6002 3' -63.4 NC_001806.1 + 22652 0.66 0.573331
Target:  5'- uGCCC--GCcGGGUacGGCGCCGCGgGGa -3'
miRNA:   3'- -CGGGcuCGaCCCG--CUGCGGCGCgUCg -5'
6002 3' -63.4 NC_001806.1 + 140612 0.66 0.567581
Target:  5'- aCCCGaAGCUGcucucgcacucgagcGGCGugGgCGCGUuuGCa -3'
miRNA:   3'- cGGGC-UCGAC---------------CCGCugCgGCGCGu-CG- -5'
6002 3' -63.4 NC_001806.1 + 28685 0.66 0.567581
Target:  5'- cGCCCGccauauUUGGGgGACGCCGUgggacccccgacuccGguGCg -3'
miRNA:   3'- -CGGGCuc----GACCCgCUGCGGCG---------------CguCG- -5'
6002 3' -63.4 NC_001806.1 + 7807 0.66 0.563756
Target:  5'- gGCCau-GUUGGGC--CGCCacGCGCGGCu -3'
miRNA:   3'- -CGGgcuCGACCCGcuGCGG--CGCGUCG- -5'
6002 3' -63.4 NC_001806.1 + 24513 0.66 0.563756
Target:  5'- gGgCCGuGCUGccGGCgcugGACgGCCGgGCGGCg -3'
miRNA:   3'- -CgGGCuCGAC--CCG----CUG-CGGCgCGUCG- -5'
6002 3' -63.4 NC_001806.1 + 1919 0.66 0.563756
Target:  5'- gGCCCGAgGCcagcaccgUGcGGCGcaggucccGCGCCGC-CGGCc -3'
miRNA:   3'- -CGGGCU-CG--------AC-CCGC--------UGCGGCGcGUCG- -5'
6002 3' -63.4 NC_001806.1 + 16476 0.66 0.563756
Target:  5'- gGCCaugguCGAGggGGGCu-UGCCGCcGCGGCu -3'
miRNA:   3'- -CGG-----GCUCgaCCCGcuGCGGCG-CGUCG- -5'
6002 3' -63.4 NC_001806.1 + 105349 0.66 0.563756
Target:  5'- cGCCCGccGGCUGccGG-GACGCCcUGCuGCa -3'
miRNA:   3'- -CGGGC--UCGAC--CCgCUGCGGcGCGuCG- -5'
6002 3' -63.4 NC_001806.1 + 53832 0.66 0.562801
Target:  5'- aGCCCGAGgaucuugccgaCUGgacgcgugcgacGGCGGCcagcuguuuggcaGCCGCGCGGg -3'
miRNA:   3'- -CGGGCUC-----------GAC------------CCGCUG-------------CGGCGCGUCg -5'
6002 3' -63.4 NC_001806.1 + 107027 0.67 0.554224
Target:  5'- -gCCGGGUUGGccgcccGCGGgGCCGCG-GGCu -3'
miRNA:   3'- cgGGCUCGACC------CGCUgCGGCGCgUCG- -5'
6002 3' -63.4 NC_001806.1 + 142174 0.67 0.554224
Target:  5'- gGUCCGAcGUggcgaugaUGGGCGGCGgCGUGguGa -3'
miRNA:   3'- -CGGGCU-CG--------ACCCGCUGCgGCGCguCg -5'
6002 3' -63.4 NC_001806.1 + 22709 0.67 0.554224
Target:  5'- cGCCCGccucccccGCgggGGGCGACGaccCCGaCGCcGCc -3'
miRNA:   3'- -CGGGCu-------CGa--CCCGCUGC---GGC-GCGuCG- -5'
6002 3' -63.4 NC_001806.1 + 38253 0.67 0.554224
Target:  5'- cGCCgGGGuCUucuggacgagacGGGCGGacCGCCGgGCgAGCg -3'
miRNA:   3'- -CGGgCUC-GA------------CCCGCU--GCGGCgCG-UCG- -5'
6002 3' -63.4 NC_001806.1 + 51237 0.67 0.554224
Target:  5'- uCCCGAcCgaacGGGCGucaccaugcaGCGCCggacGCGCGGCg -3'
miRNA:   3'- cGGGCUcGa---CCCGC----------UGCGG----CGCGUCG- -5'
6002 3' -63.4 NC_001806.1 + 68823 0.67 0.554224
Target:  5'- gGCCCugguGAGUaaucGGGUGACGCUGUucuCGGCg -3'
miRNA:   3'- -CGGG----CUCGa---CCCGCUGCGGCGc--GUCG- -5'
6002 3' -63.4 NC_001806.1 + 82725 0.67 0.554224
Target:  5'- uGUCCGGggucuGCgGGGCGGCGgCGuCGUcgGGCg -3'
miRNA:   3'- -CGGGCU-----CGaCCCGCUGCgGC-GCG--UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.