miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6003 5' -54.7 NC_001806.1 + 79266 0.65 0.9534
Target:  5'- -gUUGGGGcGGAGGgcucguugggGCCCGGaagccugGCCCCc -3'
miRNA:   3'- guGACUCCaUCUCUa---------CGGGCU-------UGGGG- -5'
6003 5' -54.7 NC_001806.1 + 113413 0.66 0.949708
Target:  5'- aGCUGGGGguGGGAcGCCaCGccauGGCCCCc -3'
miRNA:   3'- gUGACUCCauCUCUaCGG-GC----UUGGGG- -5'
6003 5' -54.7 NC_001806.1 + 18957 0.66 0.949708
Target:  5'- gCACUGc-GUGGGGGU-CCCGGGCgaCCCg -3'
miRNA:   3'- -GUGACucCAUCUCUAcGGGCUUG--GGG- -5'
6003 5' -54.7 NC_001806.1 + 25416 0.66 0.945382
Target:  5'- gGCgaggGGcGGUGGuGGUGCgCGGgcGCCCCc -3'
miRNA:   3'- gUGa---CU-CCAUCuCUACGgGCU--UGGGG- -5'
6003 5' -54.7 NC_001806.1 + 5234 0.66 0.940819
Target:  5'- gGgaGGGGgcGAGAc-CCaCGGACCCCg -3'
miRNA:   3'- gUgaCUCCauCUCUacGG-GCUUGGGG- -5'
6003 5' -54.7 NC_001806.1 + 138838 0.66 0.940819
Target:  5'- aACUGGGGccgcgGGAcgGggGCCCGGACgauuuuCCCg -3'
miRNA:   3'- gUGACUCCa----UCU--CuaCGGGCUUG------GGG- -5'
6003 5' -54.7 NC_001806.1 + 90677 0.66 0.940819
Target:  5'- gGC-GGGGcGGAGGUGCaCCGcauACCCg -3'
miRNA:   3'- gUGaCUCCaUCUCUACG-GGCu--UGGGg -5'
6003 5' -54.7 NC_001806.1 + 5083 0.66 0.935524
Target:  5'- gGCUcGGGGUGGgcGGcgGCCCGucgguggGGCCCg -3'
miRNA:   3'- gUGA-CUCCAUC--UCuaCGGGC-------UUGGGg -5'
6003 5' -54.7 NC_001806.1 + 26169 0.66 0.930975
Target:  5'- aGCggGGGGaGGAGcgGCCagacgccgaaaaCGGGCCCCc -3'
miRNA:   3'- gUGa-CUCCaUCUCuaCGG------------GCUUGGGG- -5'
6003 5' -54.7 NC_001806.1 + 65439 0.67 0.920163
Target:  5'- aACgaAGGgagcgGGGGAUGCCgCGGcCCCCg -3'
miRNA:   3'- gUGacUCCa----UCUCUACGG-GCUuGGGG- -5'
6003 5' -54.7 NC_001806.1 + 60133 0.67 0.920163
Target:  5'- aGCUgGAGGcGGAcGAUGCCUGcgccAACCUCu -3'
miRNA:   3'- gUGA-CUCCaUCU-CUACGGGC----UUGGGG- -5'
6003 5' -54.7 NC_001806.1 + 65288 0.67 0.914395
Target:  5'- aGCgggGAGGaGGAGGgggGCCCccaaGGGCCUCg -3'
miRNA:   3'- gUGa--CUCCaUCUCUa--CGGG----CUUGGGG- -5'
6003 5' -54.7 NC_001806.1 + 117064 0.67 0.914395
Target:  5'- cCACgggGGGGUGGGGGUGggcauCCagggaGAaACCCCa -3'
miRNA:   3'- -GUGa--CUCCAUCUCUAC-----GGg----CU-UGGGG- -5'
6003 5' -54.7 NC_001806.1 + 24894 0.67 0.914395
Target:  5'- uGCUGGGGgcGGAGGcggGCuuGGccacGCCCCc -3'
miRNA:   3'- gUGACUCCa-UCUCUa--CGggCU----UGGGG- -5'
6003 5' -54.7 NC_001806.1 + 147285 0.67 0.908387
Target:  5'- cCGCcGAGGacgucagGGGGGU-CCCGGGCCCa -3'
miRNA:   3'- -GUGaCUCCa------UCUCUAcGGGCUUGGGg -5'
6003 5' -54.7 NC_001806.1 + 16617 0.67 0.90214
Target:  5'- aCACgGGGG-AGGGAUGUggUCGuugGCCCCg -3'
miRNA:   3'- -GUGaCUCCaUCUCUACG--GGCu--UGGGG- -5'
6003 5' -54.7 NC_001806.1 + 3346 0.67 0.90214
Target:  5'- cCGCgGGGGgcuGGcgGgCCGGGCCCCg -3'
miRNA:   3'- -GUGaCUCCaucUCuaCgGGCUUGGGG- -5'
6003 5' -54.7 NC_001806.1 + 30027 0.68 0.895658
Target:  5'- aGCgGAGGcGGGGcgGCCgaggggccggaCGGGCCCCc -3'
miRNA:   3'- gUGaCUCCaUCUCuaCGG-----------GCUUGGGG- -5'
6003 5' -54.7 NC_001806.1 + 29609 0.68 0.888943
Target:  5'- aCGgUGAGGcggGGGGcgGCaaGGACCCUg -3'
miRNA:   3'- -GUgACUCCa--UCUCuaCGggCUUGGGG- -5'
6003 5' -54.7 NC_001806.1 + 46138 0.69 0.85518
Target:  5'- cCGCUG-GGUccGGAGggGCCgGAcgcacacccaccaccGCCCCc -3'
miRNA:   3'- -GUGACuCCA--UCUCuaCGGgCU---------------UGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.