Results 1 - 20 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6101 | 3' | -50.8 | NC_001826.1 | + | 746 | 1.05 | 0.008807 |
Target: 5'- gAAAGAGGGGGAGAGGGGGUCUGc -3' miRNA: 3'- -UUUCUCCCCCUCUCCCCCAGAC- -5' |
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6101 | 3' | -50.8 | NC_001826.1 | + | 118233 | 0.79 | 0.354621 |
Target: 5'- uGAGAGccaggcgaGGGGAGAGGGGG-CUGa -3' miRNA: 3'- uUUCUC--------CCCCUCUCCCCCaGAC- -5' |
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6101 | 3' | -50.8 | NC_001826.1 | + | 118437 | 0.77 | 0.447111 |
Target: 5'- gGAAGGGaGGGGGGAGGGGaGgcaCUGg -3' miRNA: 3'- -UUUCUC-CCCCUCUCCCC-Ca--GAC- -5' |
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6101 | 3' | -50.8 | NC_001826.1 | + | 118252 | 0.76 | 0.508615 |
Target: 5'- -uGGAGGGGGcuGGAGGGGGg--- -3' miRNA: 3'- uuUCUCCCCC--UCUCCCCCagac -5' |
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6101 | 3' | -50.8 | NC_001826.1 | + | 70537 | 0.75 | 0.547184 |
Target: 5'- uGAAGGuucagcuGGGGGAGuugguugaggagcuGGGGGGUCUGu -3' miRNA: 3'- -UUUCU-------CCCCCUC--------------UCCCCCAGAC- -5' |
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6101 | 3' | -50.8 | NC_001826.1 | + | 118130 | 0.75 | 0.55153 |
Target: 5'- aGAAGAGGGGG-GGGGGGcUCa- -3' miRNA: 3'- -UUUCUCCCCCuCUCCCCcAGac -5' |
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6101 | 3' | -50.8 | NC_001826.1 | + | 561 | 0.75 | 0.56244 |
Target: 5'- uGAGAGGGGGAGuGuGuGGUCUGu -3' miRNA: 3'- uUUCUCCCCCUCuCcC-CCAGAC- -5' |
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6101 | 3' | -50.8 | NC_001826.1 | + | 69341 | 0.75 | 0.584423 |
Target: 5'- gAGGGuGGGGGAGugggugauuGGGGGUCa- -3' miRNA: 3'- -UUUCuCCCCCUCu--------CCCCCAGac -5' |
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6101 | 3' | -50.8 | NC_001826.1 | + | 5956 | 0.75 | 0.59548 |
Target: 5'- aGGGGAGGGGGAGAu-GGGUCa- -3' miRNA: 3'- -UUUCUCCCCCUCUccCCCAGac -5' |
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6101 | 3' | -50.8 | NC_001826.1 | + | 102115 | 0.73 | 0.684261 |
Target: 5'- uGGGGAGGGGGAGGacGGGGaUCg- -3' miRNA: 3'- -UUUCUCCCCCUCU--CCCCcAGac -5' |
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6101 | 3' | -50.8 | NC_001826.1 | + | 119445 | 0.73 | 0.695244 |
Target: 5'- uGAGAGccaggcgaGGGGAGAGGGGGa--- -3' miRNA: 3'- uUUCUC--------CCCCUCUCCCCCagac -5' |
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6101 | 3' | -50.8 | NC_001826.1 | + | 28090 | 0.73 | 0.706165 |
Target: 5'- cGGGAGGGGGccGGGGaGGUCg- -3' miRNA: 3'- uUUCUCCCCCucUCCC-CCAGac -5' |
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6101 | 3' | -50.8 | NC_001826.1 | + | 27757 | 0.73 | 0.706165 |
Target: 5'- cGGGAGGGGGccGGGGaGGUCg- -3' miRNA: 3'- uUUCUCCCCCucUCCC-CCAGac -5' |
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6101 | 3' | -50.8 | NC_001826.1 | + | 27797 | 0.73 | 0.706165 |
Target: 5'- cGGGAGGGGGccGGGGaGGUCg- -3' miRNA: 3'- uUUCUCCCCCucUCCC-CCAGac -5' |
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6101 | 3' | -50.8 | NC_001826.1 | + | 27837 | 0.73 | 0.706165 |
Target: 5'- cGGGAGGGGGccGGGGaGGUCg- -3' miRNA: 3'- uUUCUCCCCCucUCCC-CCAGac -5' |
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6101 | 3' | -50.8 | NC_001826.1 | + | 27917 | 0.73 | 0.706165 |
Target: 5'- cGGGAGGGGGccGGGGaGGUCg- -3' miRNA: 3'- uUUCUCCCCCucUCCC-CCAGac -5' |
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6101 | 3' | -50.8 | NC_001826.1 | + | 27877 | 0.73 | 0.706165 |
Target: 5'- cGGGAGGGGGccGGGGaGGUCg- -3' miRNA: 3'- uUUCUCCCCCucUCCC-CCAGac -5' |
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6101 | 3' | -50.8 | NC_001826.1 | + | 28223 | 0.73 | 0.706165 |
Target: 5'- cGGGAGGGGGccGGGGaGGUCg- -3' miRNA: 3'- uUUCUCCCCCucUCCC-CCAGac -5' |
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6101 | 3' | -50.8 | NC_001826.1 | + | 28264 | 0.73 | 0.706165 |
Target: 5'- cGGGAGGGGGccGGGGaGGUCg- -3' miRNA: 3'- uUUCUCCCCCucUCCC-CCAGac -5' |
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6101 | 3' | -50.8 | NC_001826.1 | + | 27957 | 0.73 | 0.706165 |
Target: 5'- cGGGAGGGGGccGGGGaGGUCg- -3' miRNA: 3'- uUUCUCCCCCucUCCC-CCAGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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