miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6101 3' -50.8 NC_001826.1 + 561 0.75 0.56244
Target:  5'- uGAGAGGGGGAGuGuGuGGUCUGu -3'
miRNA:   3'- uUUCUCCCCCUCuCcC-CCAGAC- -5'
6101 3' -50.8 NC_001826.1 + 746 1.05 0.008807
Target:  5'- gAAAGAGGGGGAGAGGGGGUCUGc -3'
miRNA:   3'- -UUUCUCCCCCUCUCCCCCAGAC- -5'
6101 3' -50.8 NC_001826.1 + 5956 0.75 0.59548
Target:  5'- aGGGGAGGGGGAGAu-GGGUCa- -3'
miRNA:   3'- -UUUCUCCCCCUCUccCCCAGac -5'
6101 3' -50.8 NC_001826.1 + 16777 0.66 0.967459
Target:  5'- uGAGAGGGGu--GGGGGaGUCUc -3'
miRNA:   3'- uUUCUCCCCcucUCCCC-CAGAc -5'
6101 3' -50.8 NC_001826.1 + 26482 0.66 0.963963
Target:  5'- gAAAGGGuGGGGcuaaaAGGGGGGGa--- -3'
miRNA:   3'- -UUUCUC-CCCC-----UCUCCCCCagac -5'
6101 3' -50.8 NC_001826.1 + 26918 0.73 0.706165
Target:  5'- cGGGAGGGGGccGGGGaGGUCg- -3'
miRNA:   3'- uUUCUCCCCCucUCCC-CCAGac -5'
6101 3' -50.8 NC_001826.1 + 26958 0.73 0.706165
Target:  5'- cGGGAGGGGGccGGGGaGGUCg- -3'
miRNA:   3'- uUUCUCCCCCucUCCC-CCAGac -5'
6101 3' -50.8 NC_001826.1 + 26998 0.73 0.706165
Target:  5'- cGGGAGGGGGccGGGGaGGUCg- -3'
miRNA:   3'- uUUCUCCCCCucUCCC-CCAGac -5'
6101 3' -50.8 NC_001826.1 + 27038 0.73 0.706165
Target:  5'- cGGGAGGGGGccGGGGaGGUCg- -3'
miRNA:   3'- uUUCUCCCCCucUCCC-CCAGac -5'
6101 3' -50.8 NC_001826.1 + 27078 0.73 0.706165
Target:  5'- cGGGAGGGGGccGGGGaGGUCg- -3'
miRNA:   3'- uUUCUCCCCCucUCCC-CCAGac -5'
6101 3' -50.8 NC_001826.1 + 27118 0.73 0.706165
Target:  5'- cGGGAGGGGGccGGGGaGGUCg- -3'
miRNA:   3'- uUUCUCCCCCucUCCC-CCAGac -5'
6101 3' -50.8 NC_001826.1 + 27158 0.73 0.706165
Target:  5'- cGGGAGGGGGccGGGGaGGUCg- -3'
miRNA:   3'- uUUCUCCCCCucUCCC-CCAGac -5'
6101 3' -50.8 NC_001826.1 + 27198 0.73 0.706165
Target:  5'- cGGGAGGGGGccGGGGaGGUCg- -3'
miRNA:   3'- uUUCUCCCCCucUCCC-CCAGac -5'
6101 3' -50.8 NC_001826.1 + 27238 0.73 0.706165
Target:  5'- cGGGAGGGGGccGGGGaGGUCg- -3'
miRNA:   3'- uUUCUCCCCCucUCCC-CCAGac -5'
6101 3' -50.8 NC_001826.1 + 27278 0.73 0.706165
Target:  5'- cGGGAGGGGGccGGGGaGGUCg- -3'
miRNA:   3'- uUUCUCCCCCucUCCC-CCAGac -5'
6101 3' -50.8 NC_001826.1 + 27318 0.73 0.706165
Target:  5'- cGGGAGGGGGccGGGGaGGUCg- -3'
miRNA:   3'- uUUCUCCCCCucUCCC-CCAGac -5'
6101 3' -50.8 NC_001826.1 + 27358 0.73 0.706165
Target:  5'- cGGGAGGGGGccGGGGaGGUCg- -3'
miRNA:   3'- uUUCUCCCCCucUCCC-CCAGac -5'
6101 3' -50.8 NC_001826.1 + 27398 0.73 0.706165
Target:  5'- cGGGAGGGGGccGGGGaGGUCg- -3'
miRNA:   3'- uUUCUCCCCCucUCCC-CCAGac -5'
6101 3' -50.8 NC_001826.1 + 27438 0.73 0.706165
Target:  5'- cGGGAGGGGGccGGGGaGGUCg- -3'
miRNA:   3'- uUUCUCCCCCucUCCC-CCAGac -5'
6101 3' -50.8 NC_001826.1 + 27478 0.73 0.706165
Target:  5'- cGGGAGGGGGccGGGGaGGUCg- -3'
miRNA:   3'- uUUCUCCCCCucUCCC-CCAGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.