miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6101 3' -50.8 NC_001826.1 + 118252 0.76 0.508615
Target:  5'- -uGGAGGGGGcuGGAGGGGGg--- -3'
miRNA:   3'- uuUCUCCCCC--UCUCCCCCagac -5'
6101 3' -50.8 NC_001826.1 + 26482 0.66 0.963963
Target:  5'- gAAAGGGuGGGGcuaaaAGGGGGGGa--- -3'
miRNA:   3'- -UUUCUC-CCCC-----UCUCCCCCagac -5'
6101 3' -50.8 NC_001826.1 + 103966 0.66 0.963963
Target:  5'- ---uAGGGGGcucuGuAGGGGGcUCUGg -3'
miRNA:   3'- uuucUCCCCCu---C-UCCCCC-AGAC- -5'
6101 3' -50.8 NC_001826.1 + 118222 0.67 0.947371
Target:  5'- -cAGGGcucGGGAGuGGGGGGUgCUGg -3'
miRNA:   3'- uuUCUCc--CCCUC-UCCCCCA-GAC- -5'
6101 3' -50.8 NC_001826.1 + 104546 0.67 0.936914
Target:  5'- uGAAGGGGGcacugguGGuGAugGGGGGUUUGg -3'
miRNA:   3'- -UUUCUCCC-------CCuCU--CCCCCAGAC- -5'
6101 3' -50.8 NC_001826.1 + 118582 0.68 0.926387
Target:  5'- ---aGGGGGGAGGGGcacGGUCa- -3'
miRNA:   3'- uuucUCCCCCUCUCCc--CCAGac -5'
6101 3' -50.8 NC_001826.1 + 104399 0.68 0.926387
Target:  5'- -uGGAGGGGGAccGGGaucGUCUGu -3'
miRNA:   3'- uuUCUCCCCCUcuCCCc--CAGAC- -5'
6101 3' -50.8 NC_001826.1 + 116883 0.68 0.919825
Target:  5'- uGAGAGGGGGcGAGGaugaacaggcccaGGGUugaCUGg -3'
miRNA:   3'- uUUCUCCCCCuCUCC-------------CCCA---GAC- -5'
6101 3' -50.8 NC_001826.1 + 118531 0.69 0.893832
Target:  5'- cGGAGGGGcGGGGGuccggggggcGGGGGuGUCUa -3'
miRNA:   3'- -UUUCUCC-CCCUC----------UCCCC-CAGAc -5'
6101 3' -50.8 NC_001826.1 + 118821 0.7 0.854553
Target:  5'- cGGGGAGGGGGGccgggcGGGGGGagUGc -3'
miRNA:   3'- -UUUCUCCCCCUc-----UCCCCCagAC- -5'
6101 3' -50.8 NC_001826.1 + 72594 0.7 0.837124
Target:  5'- uAGGGAGGGGc---GGGGGUUUGg -3'
miRNA:   3'- -UUUCUCCCCcucuCCCCCAGAC- -5'
6101 3' -50.8 NC_001826.1 + 5956 0.75 0.59548
Target:  5'- aGGGGAGGGGGAGAu-GGGUCa- -3'
miRNA:   3'- -UUUCUCCCCCUCUccCCCAGac -5'
6101 3' -50.8 NC_001826.1 + 561 0.75 0.56244
Target:  5'- uGAGAGGGGGAGuGuGuGGUCUGu -3'
miRNA:   3'- uUUCUCCCCCUCuCcC-CCAGAC- -5'
6101 3' -50.8 NC_001826.1 + 118130 0.75 0.55153
Target:  5'- aGAAGAGGGGG-GGGGGGcUCa- -3'
miRNA:   3'- -UUUCUCCCCCuCUCCCCcAGac -5'
6101 3' -50.8 NC_001826.1 + 102115 0.73 0.684261
Target:  5'- uGGGGAGGGGGAGGacGGGGaUCg- -3'
miRNA:   3'- -UUUCUCCCCCUCU--CCCCcAGac -5'
6101 3' -50.8 NC_001826.1 + 69341 0.75 0.584423
Target:  5'- gAGGGuGGGGGAGugggugauuGGGGGUCa- -3'
miRNA:   3'- -UUUCuCCCCCUCu--------CCCCCAGac -5'
6101 3' -50.8 NC_001826.1 + 70537 0.75 0.547184
Target:  5'- uGAAGGuucagcuGGGGGAGuugguugaggagcuGGGGGGUCUGu -3'
miRNA:   3'- -UUUCU-------CCCCCUC--------------UCCCCCAGAC- -5'
6101 3' -50.8 NC_001826.1 + 118437 0.77 0.447111
Target:  5'- gGAAGGGaGGGGGGAGGGGaGgcaCUGg -3'
miRNA:   3'- -UUUCUC-CCCCUCUCCCC-Ca--GAC- -5'
6101 3' -50.8 NC_001826.1 + 118233 0.79 0.354621
Target:  5'- uGAGAGccaggcgaGGGGAGAGGGGG-CUGa -3'
miRNA:   3'- uUUCUC--------CCCCUCUCCCCCaGAC- -5'
6101 3' -50.8 NC_001826.1 + 16777 0.66 0.967459
Target:  5'- uGAGAGGGGu--GGGGGaGUCUc -3'
miRNA:   3'- uUUCUCCCCcucUCCCC-CAGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.