miRNA display CGI


Results 1 - 20 of 59 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6118 3' -60.1 NC_001826.1 + 98134 0.66 0.650623
Target:  5'- cGCCAGGaCCUGGGGcuugacuuCCUGcGGGa -3'
miRNA:   3'- uUGGUCC-GGACCUCucau----GGAC-CCCa -5'
6118 3' -60.1 NC_001826.1 + 100732 0.66 0.619733
Target:  5'- uGCCcGGCCcGGGGugcgGGUcccccgGCCUGGGGa -3'
miRNA:   3'- uUGGuCCGGaCCUC----UCA------UGGACCCCa -5'
6118 3' -60.1 NC_001826.1 + 99832 0.66 0.619733
Target:  5'- uGCCcGGCCcGGGGugcgGGUcccccgGCCUGGGGa -3'
miRNA:   3'- uUGGuCCGGaCCUC----UCA------UGGACCCCa -5'
6118 3' -60.1 NC_001826.1 + 99932 0.66 0.619733
Target:  5'- uGCCcGGCCcGGGGugcgGGUcccccgGCCUGGGGa -3'
miRNA:   3'- uUGGuCCGGaCCUC----UCA------UGGACCCCa -5'
6118 3' -60.1 NC_001826.1 + 100032 0.66 0.619733
Target:  5'- uGCCcGGCCcGGGGugcgGGUcccccgGCCUGGGGa -3'
miRNA:   3'- uUGGuCCGGaCCUC----UCA------UGGACCCCa -5'
6118 3' -60.1 NC_001826.1 + 100132 0.66 0.619733
Target:  5'- uGCCcGGCCcGGGGugcgGGUcccccgGCCUGGGGa -3'
miRNA:   3'- uUGGuCCGGaCCUC----UCA------UGGACCCCa -5'
6118 3' -60.1 NC_001826.1 + 100232 0.66 0.619733
Target:  5'- uGCCcGGCCcGGGGugcgGGUcccccgGCCUGGGGa -3'
miRNA:   3'- uUGGuCCGGaCCUC----UCA------UGGACCCCa -5'
6118 3' -60.1 NC_001826.1 + 100332 0.66 0.619733
Target:  5'- uGCCcGGCCcGGGGugcgGGUcccccgGCCUGGGGa -3'
miRNA:   3'- uUGGuCCGGaCCUC----UCA------UGGACCCCa -5'
6118 3' -60.1 NC_001826.1 + 100432 0.66 0.619733
Target:  5'- uGCCcGGCCcGGGGugcgGGUcccccgGCCUGGGGa -3'
miRNA:   3'- uUGGuCCGGaCCUC----UCA------UGGACCCCa -5'
6118 3' -60.1 NC_001826.1 + 100532 0.66 0.619733
Target:  5'- uGCCcGGCCcGGGGugcgGGUcccccgGCCUGGGGa -3'
miRNA:   3'- uUGGuCCGGaCCUC----UCA------UGGACCCCa -5'
6118 3' -60.1 NC_001826.1 + 99733 0.66 0.619733
Target:  5'- uGCCcGGCCcGGGGugcgGGUcccccgGCCUGGGGa -3'
miRNA:   3'- uUGGuCCGGaCCUC----UCA------UGGACCCCa -5'
6118 3' -60.1 NC_001826.1 + 99633 0.66 0.619733
Target:  5'- uGCCcGGCCcGGGGugcgGGUcccccgGCCUGGGGa -3'
miRNA:   3'- uUGGuCCGGaCCUC----UCA------UGGACCCCa -5'
6118 3' -60.1 NC_001826.1 + 100831 0.66 0.619733
Target:  5'- uGCCcGGCCcGGGGugcgGGUcccccgGCCUGGGGa -3'
miRNA:   3'- uUGGuCCGGaCCUC----UCA------UGGACCCCa -5'
6118 3' -60.1 NC_001826.1 + 99033 0.66 0.619733
Target:  5'- uGCCcGGCCcGGGGugcgGGUcccccgGCCUGGGGa -3'
miRNA:   3'- uUGGuCCGGaCCUC----UCA------UGGACCCCa -5'
6118 3' -60.1 NC_001826.1 + 99133 0.66 0.619733
Target:  5'- uGCCcGGCCcGGGGugcgGGUcccccgGCCUGGGGa -3'
miRNA:   3'- uUGGuCCGGaCCUC----UCA------UGGACCCCa -5'
6118 3' -60.1 NC_001826.1 + 99233 0.66 0.619733
Target:  5'- uGCCcGGCCcGGGGugcgGGUcccccgGCCUGGGGa -3'
miRNA:   3'- uUGGuCCGGaCCUC----UCA------UGGACCCCa -5'
6118 3' -60.1 NC_001826.1 + 99333 0.66 0.619733
Target:  5'- uGCCcGGCCcGGGGugcgGGUcccccgGCCUGGGGa -3'
miRNA:   3'- uUGGuCCGGaCCUC----UCA------UGGACCCCa -5'
6118 3' -60.1 NC_001826.1 + 99433 0.66 0.619733
Target:  5'- uGCCcGGCCcGGGGugcgGGUcccccgGCCUGGGGa -3'
miRNA:   3'- uUGGuCCGGaCCUC----UCA------UGGACCCCa -5'
6118 3' -60.1 NC_001826.1 + 99533 0.66 0.619733
Target:  5'- uGCCcGGCCcGGGGugcgGGUcccccgGCCUGGGGa -3'
miRNA:   3'- uUGGuCCGGaCCUC----UCA------UGGACCCCa -5'
6118 3' -60.1 NC_001826.1 + 100632 0.66 0.619733
Target:  5'- uGCCcGGCCcGGGGugcgGGUcccccgGCCUGGGGa -3'
miRNA:   3'- uUGGuCCGGaCCUC----UCA------UGGACCCCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.