miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6121 3' -57.1 NC_001826.1 + 104766 1.1 0.001305
Target:  5'- aAAAAGACCAGCCCCUCCUCCACCACCg -3'
miRNA:   3'- -UUUUCUGGUCGGGGAGGAGGUGGUGG- -5'
6121 3' -57.1 NC_001826.1 + 64185 0.83 0.100181
Target:  5'- cGGAGACCAGCCCagcaagaaCUCCUCCAacucCCGCCu -3'
miRNA:   3'- uUUUCUGGUCGGG--------GAGGAGGU----GGUGG- -5'
6121 3' -57.1 NC_001826.1 + 95691 0.76 0.27559
Target:  5'- gGAGAGcCCAGCCCCUaucaucuuauacccaCgUCCACCACa -3'
miRNA:   3'- -UUUUCuGGUCGGGGA---------------GgAGGUGGUGg -5'
6121 3' -57.1 NC_001826.1 + 118412 0.76 0.279584
Target:  5'- cGAGGGCCAGCUCCggccccggcgcCCUCC-CCGCCc -3'
miRNA:   3'- uUUUCUGGUCGGGGa----------GGAGGuGGUGG- -5'
6121 3' -57.1 NC_001826.1 + 118167 0.75 0.314661
Target:  5'- cAGGGGGcCCAGCCCCUaCC-CC-CCACCc -3'
miRNA:   3'- -UUUUCU-GGUCGGGGA-GGaGGuGGUGG- -5'
6121 3' -57.1 NC_001826.1 + 118715 0.74 0.337256
Target:  5'- -cAGGGCCcgAGCCCCUCUUCC-CC-CCu -3'
miRNA:   3'- uuUUCUGG--UCGGGGAGGAGGuGGuGG- -5'
6121 3' -57.1 NC_001826.1 + 68628 0.73 0.377483
Target:  5'- ----aGCCcuGGCCCUUCUUCCGCCACa -3'
miRNA:   3'- uuuucUGG--UCGGGGAGGAGGUGGUGg -5'
6121 3' -57.1 NC_001826.1 + 104546 0.73 0.394453
Target:  5'- gGAGAGAcagacgaucCCGGUCCC-CCUCCACCAa- -3'
miRNA:   3'- -UUUUCU---------GGUCGGGGaGGAGGUGGUgg -5'
6121 3' -57.1 NC_001826.1 + 117359 0.73 0.420814
Target:  5'- cGGAGACCGGaCUCUUCCcaaccUCCuACCGCCg -3'
miRNA:   3'- uUUUCUGGUC-GGGGAGG-----AGG-UGGUGG- -5'
6121 3' -57.1 NC_001826.1 + 118860 0.73 0.420814
Target:  5'- gAGGGGACCccuGCCCCUaCC-CC-CCACCc -3'
miRNA:   3'- -UUUUCUGGu--CGGGGA-GGaGGuGGUGG- -5'
6121 3' -57.1 NC_001826.1 + 118813 0.72 0.448211
Target:  5'- -cGGGuCUAGCCCCUCCgggggCC-CCGCUa -3'
miRNA:   3'- uuUUCuGGUCGGGGAGGa----GGuGGUGG- -5'
6121 3' -57.1 NC_001826.1 + 118719 0.72 0.448211
Target:  5'- ---uGACCGuGCCCCUCC-CC-CCugCa -3'
miRNA:   3'- uuuuCUGGU-CGGGGAGGaGGuGGugG- -5'
6121 3' -57.1 NC_001826.1 + 104643 0.72 0.457561
Target:  5'- -----cCCcGUCCCUCCUUCAUCACCa -3'
miRNA:   3'- uuuucuGGuCGGGGAGGAGGUGGUGG- -5'
6121 3' -57.1 NC_001826.1 + 48610 0.7 0.544857
Target:  5'- uAGAGACacaCAGCCCCUacuuccaacugggCCUCCAgacUCACCu -3'
miRNA:   3'- uUUUCUG---GUCGGGGA-------------GGAGGU---GGUGG- -5'
6121 3' -57.1 NC_001826.1 + 1287 0.7 0.576592
Target:  5'- aAGGAGGCaaacccgAGCUCCUCCUUCuuuucaACCACCu -3'
miRNA:   3'- -UUUUCUGg------UCGGGGAGGAGG------UGGUGG- -5'
6121 3' -57.1 NC_001826.1 + 118666 0.69 0.607679
Target:  5'- --cGGACCcccGCCCCUCCgggacCCGcCCACa -3'
miRNA:   3'- uuuUCUGGu--CGGGGAGGa----GGU-GGUGg -5'
6121 3' -57.1 NC_001826.1 + 29654 0.69 0.618089
Target:  5'- uGAGAGG-CAGCagaCUCUUCCGCCAUCu -3'
miRNA:   3'- -UUUUCUgGUCGgg-GAGGAGGUGGUGG- -5'
6121 3' -57.1 NC_001826.1 + 87457 0.68 0.659758
Target:  5'- --uGGcAUCAGUCCaCUCCUCC-CCACa -3'
miRNA:   3'- uuuUC-UGGUCGGG-GAGGAGGuGGUGg -5'
6121 3' -57.1 NC_001826.1 + 11791 0.68 0.68049
Target:  5'- --cAGAUCAGgCgCUCuuuaaaacuCUCCGCCACCa -3'
miRNA:   3'- uuuUCUGGUCgGgGAG---------GAGGUGGUGG- -5'
6121 3' -57.1 NC_001826.1 + 78371 0.68 0.681522
Target:  5'- cAAGAGACCAcCCCCUaagaaagacagggaaC-CCACCACUa -3'
miRNA:   3'- -UUUUCUGGUcGGGGAg--------------GaGGUGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.