miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6121 3' -57.1 NC_001826.1 + 95691 0.76 0.27559
Target:  5'- gGAGAGcCCAGCCCCUaucaucuuauacccaCgUCCACCACa -3'
miRNA:   3'- -UUUUCuGGUCGGGGA---------------GgAGGUGGUGg -5'
6121 3' -57.1 NC_001826.1 + 69660 0.66 0.807787
Target:  5'- cAAAGACgcccgCAGCgCUUCCgcguccgaucCCACCACCu -3'
miRNA:   3'- uUUUCUG-----GUCGgGGAGGa---------GGUGGUGG- -5'
6121 3' -57.1 NC_001826.1 + 13025 0.66 0.807787
Target:  5'- ----uACCAGgUCCUUCUUCACCAUa -3'
miRNA:   3'- uuuucUGGUCgGGGAGGAGGUGGUGg -5'
6121 3' -57.1 NC_001826.1 + 118924 0.66 0.789503
Target:  5'- ---cGGCgGGCCCCgguUCC-CC-CCGCCc -3'
miRNA:   3'- uuuuCUGgUCGGGG---AGGaGGuGGUGG- -5'
6121 3' -57.1 NC_001826.1 + 9111 0.66 0.789503
Target:  5'- ----aACCAGCCCCUCCU--GgCACUu -3'
miRNA:   3'- uuuucUGGUCGGGGAGGAggUgGUGG- -5'
6121 3' -57.1 NC_001826.1 + 24886 0.66 0.789503
Target:  5'- -uAGGcACCcgGGCCCUUCCaCCAUCACg -3'
miRNA:   3'- uuUUC-UGG--UCGGGGAGGaGGUGGUGg -5'
6121 3' -57.1 NC_001826.1 + 46608 0.66 0.777299
Target:  5'- uGGAAGGCCAGUgUCUugUCUCCACUcaacauauaaauagGCCa -3'
miRNA:   3'- -UUUUCUGGUCGgGGA--GGAGGUGG--------------UGG- -5'
6121 3' -57.1 NC_001826.1 + 12469 0.66 0.770631
Target:  5'- ---cGGCUAGCCUCcacgCCUCagggCACUACCg -3'
miRNA:   3'- uuuuCUGGUCGGGGa---GGAG----GUGGUGG- -5'
6121 3' -57.1 NC_001826.1 + 10855 0.67 0.72138
Target:  5'- ----cACCAGCCCCcaaacugCCUCUACgGCg -3'
miRNA:   3'- uuuucUGGUCGGGGa------GGAGGUGgUGg -5'
6121 3' -57.1 NC_001826.1 + 29654 0.69 0.618089
Target:  5'- uGAGAGG-CAGCagaCUCUUCCGCCAUCu -3'
miRNA:   3'- -UUUUCUgGUCGgg-GAGGAGGUGGUGG- -5'
6121 3' -57.1 NC_001826.1 + 118412 0.76 0.279584
Target:  5'- cGAGGGCCAGCUCCggccccggcgcCCUCC-CCGCCc -3'
miRNA:   3'- uUUUCUGGUCGGGGa----------GGAGGuGGUGG- -5'
6121 3' -57.1 NC_001826.1 + 118167 0.75 0.314661
Target:  5'- cAGGGGGcCCAGCCCCUaCC-CC-CCACCc -3'
miRNA:   3'- -UUUUCU-GGUCGGGGA-GGaGGuGGUGG- -5'
6121 3' -57.1 NC_001826.1 + 118715 0.74 0.337256
Target:  5'- -cAGGGCCcgAGCCCCUCUUCC-CC-CCu -3'
miRNA:   3'- uuUUCUGG--UCGGGGAGGAGGuGGuGG- -5'
6121 3' -57.1 NC_001826.1 + 68628 0.73 0.377483
Target:  5'- ----aGCCcuGGCCCUUCUUCCGCCACa -3'
miRNA:   3'- uuuucUGG--UCGGGGAGGAGGUGGUGg -5'
6121 3' -57.1 NC_001826.1 + 118860 0.73 0.420814
Target:  5'- gAGGGGACCccuGCCCCUaCC-CC-CCACCc -3'
miRNA:   3'- -UUUUCUGGu--CGGGGA-GGaGGuGGUGG- -5'
6121 3' -57.1 NC_001826.1 + 1287 0.7 0.576592
Target:  5'- aAGGAGGCaaacccgAGCUCCUCCUUCuuuucaACCACCu -3'
miRNA:   3'- -UUUUCUGg------UCGGGGAGGAGG------UGGUGG- -5'
6121 3' -57.1 NC_001826.1 + 104766 1.1 0.001305
Target:  5'- aAAAAGACCAGCCCCUCCUCCACCACCg -3'
miRNA:   3'- -UUUUCUGGUCGGGGAGGAGGUGGUGG- -5'
6121 3' -57.1 NC_001826.1 + 119176 0.66 0.798723
Target:  5'- -----cCCAGCCCCgggUCUCCaggGCgCGCCg -3'
miRNA:   3'- uuuucuGGUCGGGGa--GGAGG---UG-GUGG- -5'
6121 3' -57.1 NC_001826.1 + 44933 0.66 0.798723
Target:  5'- --uGGGCCAGCCCUgCUggCACUACa -3'
miRNA:   3'- uuuUCUGGUCGGGGaGGagGUGGUGg -5'
6121 3' -57.1 NC_001826.1 + 26552 0.66 0.770631
Target:  5'- --uGGugU-GCCCCUCC-CUACUGCCc -3'
miRNA:   3'- uuuUCugGuCGGGGAGGaGGUGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.