miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6121 3' -57.1 NC_001826.1 + 1287 0.7 0.576592
Target:  5'- aAGGAGGCaaacccgAGCUCCUCCUUCuuuucaACCACCu -3'
miRNA:   3'- -UUUUCUGg------UCGGGGAGGAGG------UGGUGG- -5'
6121 3' -57.1 NC_001826.1 + 9111 0.66 0.789503
Target:  5'- ----aACCAGCCCCUCCU--GgCACUu -3'
miRNA:   3'- uuuucUGGUCGGGGAGGAggUgGUGG- -5'
6121 3' -57.1 NC_001826.1 + 10855 0.67 0.72138
Target:  5'- ----cACCAGCCCCcaaacugCCUCUACgGCg -3'
miRNA:   3'- uuuucUGGUCGGGGa------GGAGGUGgUGg -5'
6121 3' -57.1 NC_001826.1 + 11791 0.68 0.68049
Target:  5'- --cAGAUCAGgCgCUCuuuaaaacuCUCCGCCACCa -3'
miRNA:   3'- uuuUCUGGUCgGgGAG---------GAGGUGGUGG- -5'
6121 3' -57.1 NC_001826.1 + 12469 0.66 0.770631
Target:  5'- ---cGGCUAGCCUCcacgCCUCagggCACUACCg -3'
miRNA:   3'- uuuuCUGGUCGGGGa---GGAG----GUGGUGG- -5'
6121 3' -57.1 NC_001826.1 + 13025 0.66 0.807787
Target:  5'- ----uACCAGgUCCUUCUUCACCAUa -3'
miRNA:   3'- uuuucUGGUCgGGGAGGAGGUGGUGg -5'
6121 3' -57.1 NC_001826.1 + 22981 0.68 0.690798
Target:  5'- uGAGAaACCAuCCCCUCCUCCcCCGa- -3'
miRNA:   3'- -UUUUcUGGUcGGGGAGGAGGuGGUgg -5'
6121 3' -57.1 NC_001826.1 + 24886 0.66 0.789503
Target:  5'- -uAGGcACCcgGGCCCUUCCaCCAUCACg -3'
miRNA:   3'- uuUUC-UGG--UCGGGGAGGaGGUGGUGg -5'
6121 3' -57.1 NC_001826.1 + 26552 0.66 0.770631
Target:  5'- --uGGugU-GCCCCUCC-CUACUGCCc -3'
miRNA:   3'- uuuUCugGuCGGGGAGGaGGUGGUGG- -5'
6121 3' -57.1 NC_001826.1 + 28633 0.67 0.711253
Target:  5'- --cGGGgCGGCCgCCgcgCCUCCACcCACg -3'
miRNA:   3'- uuuUCUgGUCGG-GGa--GGAGGUG-GUGg -5'
6121 3' -57.1 NC_001826.1 + 29654 0.69 0.618089
Target:  5'- uGAGAGG-CAGCagaCUCUUCCGCCAUCu -3'
miRNA:   3'- -UUUUCUgGUCGgg-GAGGAGGUGGUGG- -5'
6121 3' -57.1 NC_001826.1 + 44933 0.66 0.798723
Target:  5'- --uGGGCCAGCCCUgCUggCACUACa -3'
miRNA:   3'- uuuUCUGGUCGGGGaGGagGUGGUGg -5'
6121 3' -57.1 NC_001826.1 + 46608 0.66 0.777299
Target:  5'- uGGAAGGCCAGUgUCUugUCUCCACUcaacauauaaauagGCCa -3'
miRNA:   3'- -UUUUCUGGUCGgGGA--GGAGGUGG--------------UGG- -5'
6121 3' -57.1 NC_001826.1 + 48610 0.7 0.544857
Target:  5'- uAGAGACacaCAGCCCCUacuuccaacugggCCUCCAgacUCACCu -3'
miRNA:   3'- uUUUCUG---GUCGGGGA-------------GGAGGU---GGUGG- -5'
6121 3' -57.1 NC_001826.1 + 64185 0.83 0.100181
Target:  5'- cGGAGACCAGCCCagcaagaaCUCCUCCAacucCCGCCu -3'
miRNA:   3'- uUUUCUGGUCGGG--------GAGGAGGU----GGUGG- -5'
6121 3' -57.1 NC_001826.1 + 65109 0.68 0.701055
Target:  5'- ------aCAGCUCCUCCUuuaaggUCGCCGCCu -3'
miRNA:   3'- uuuucugGUCGGGGAGGA------GGUGGUGG- -5'
6121 3' -57.1 NC_001826.1 + 68628 0.73 0.377483
Target:  5'- ----aGCCcuGGCCCUUCUUCCGCCACa -3'
miRNA:   3'- uuuucUGG--UCGGGGAGGAGGUGGUGg -5'
6121 3' -57.1 NC_001826.1 + 69660 0.66 0.807787
Target:  5'- cAAAGACgcccgCAGCgCUUCCgcguccgaucCCACCACCu -3'
miRNA:   3'- uUUUCUG-----GUCGgGGAGGa---------GGUGGUGG- -5'
6121 3' -57.1 NC_001826.1 + 78371 0.68 0.681522
Target:  5'- cAAGAGACCAcCCCCUaagaaagacagggaaC-CCACCACUa -3'
miRNA:   3'- -UUUUCUGGUcGGGGAg--------------GaGGUGGUGG- -5'
6121 3' -57.1 NC_001826.1 + 87457 0.68 0.659758
Target:  5'- --uGGcAUCAGUCCaCUCCUCC-CCACa -3'
miRNA:   3'- uuuUC-UGGUCGGG-GAGGAGGuGGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.