miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6124 3' -59 NC_001826.1 + 26885 0.72 0.362018
Target:  5'- gGGGCCCGg--AUCCCcgaccuccCCGGCCCCCu -3'
miRNA:   3'- -CUUGGGCagaUAGGGu-------GGUCGGGGGu -5'
6124 3' -59 NC_001826.1 + 26964 0.72 0.362018
Target:  5'- gGGGCCCGg--AUCCCcgaccuccCCGGCCCCCu -3'
miRNA:   3'- -CUUGGGCagaUAGGGu-------GGUCGGGGGu -5'
6124 3' -59 NC_001826.1 + 27004 0.72 0.362018
Target:  5'- gGGGCCCGg--AUCCCcgaccuccCCGGCCCCCu -3'
miRNA:   3'- -CUUGGGCagaUAGGGu-------GGUCGGGGGu -5'
6124 3' -59 NC_001826.1 + 27044 0.72 0.362018
Target:  5'- gGGGCCCGg--AUCCCcgaccuccCCGGCCCCCu -3'
miRNA:   3'- -CUUGGGCagaUAGGGu-------GGUCGGGGGu -5'
6124 3' -59 NC_001826.1 + 27244 0.72 0.362018
Target:  5'- gGGGCCCGg--AUCCCcgaccuccCCGGCCCCCu -3'
miRNA:   3'- -CUUGGGCagaUAGGGu-------GGUCGGGGGu -5'
6124 3' -59 NC_001826.1 + 27204 0.72 0.362018
Target:  5'- gGGGCCCGg--AUCCCcgaccuccCCGGCCCCCu -3'
miRNA:   3'- -CUUGGGCagaUAGGGu-------GGUCGGGGGu -5'
6124 3' -59 NC_001826.1 + 27164 0.72 0.362018
Target:  5'- gGGGCCCGg--AUCCCcgaccuccCCGGCCCCCu -3'
miRNA:   3'- -CUUGGGCagaUAGGGu-------GGUCGGGGGu -5'
6124 3' -59 NC_001826.1 + 27124 0.72 0.362018
Target:  5'- gGGGCCCGg--AUCCCcgaccuccCCGGCCCCCu -3'
miRNA:   3'- -CUUGGGCagaUAGGGu-------GGUCGGGGGu -5'
6124 3' -59 NC_001826.1 + 27084 0.72 0.362018
Target:  5'- gGGGCCCGg--AUCCCcgaccuccCCGGCCCCCu -3'
miRNA:   3'- -CUUGGGCagaUAGGGu-------GGUCGGGGGu -5'
6124 3' -59 NC_001826.1 + 27844 0.72 0.394919
Target:  5'- gGGGCCCGg--AUCCCccgaccuucCCGGCCCCCu -3'
miRNA:   3'- -CUUGGGCagaUAGGGu--------GGUCGGGGGu -5'
6124 3' -59 NC_001826.1 + 27976 0.72 0.394919
Target:  5'- gGGGCCCGg--AUCCCccgaccuucCCGGCCCCCu -3'
miRNA:   3'- -CUUGGGCagaUAGGGu--------GGUCGGGGGu -5'
6124 3' -59 NC_001826.1 + 28068 0.72 0.394919
Target:  5'- gGGGCCCGg--AUCCCccgaccuccCCGGCCCCCu -3'
miRNA:   3'- -CUUGGGCagaUAGGGu--------GGUCGGGGGu -5'
6124 3' -59 NC_001826.1 + 55939 0.72 0.394919
Target:  5'- cAACCUuuccaGUCUAUCCCACaacCCCCCAg -3'
miRNA:   3'- cUUGGG-----CAGAUAGGGUGgucGGGGGU- -5'
6124 3' -59 NC_001826.1 + 28017 0.7 0.456922
Target:  5'- gGGGCCCGg--AUCCCcCCGGuuCCCCCGa -3'
miRNA:   3'- -CUUGGGCagaUAGGGuGGUC--GGGGGU- -5'
6124 3' -59 NC_001826.1 + 27885 0.7 0.456922
Target:  5'- gGGGCCCGg--AUCCCcCCGGuuCCCCCGa -3'
miRNA:   3'- -CUUGGGCagaUAGGGuGGUC--GGGGGU- -5'
6124 3' -59 NC_001826.1 + 70541 0.7 0.504254
Target:  5'- uGAGCCC-UCUAcCCCAgaacCCAGCaCCCCc -3'
miRNA:   3'- -CUUGGGcAGAUaGGGU----GGUCG-GGGGu -5'
6124 3' -59 NC_001826.1 + 22569 0.69 0.52378
Target:  5'- --uCCCGUCUAUCCCcgcgcAUCAGCUgCUAu -3'
miRNA:   3'- cuuGGGCAGAUAGGG-----UGGUCGGgGGU- -5'
6124 3' -59 NC_001826.1 + 119201 0.69 0.553584
Target:  5'- cAGCCCGguagggucUCUGggcgCCC-CCAGCCCCgGg -3'
miRNA:   3'- cUUGGGC--------AGAUa---GGGuGGUCGGGGgU- -5'
6124 3' -59 NC_001826.1 + 28109 0.68 0.563634
Target:  5'- gGGGCCCGgu--UCCCccgaccuccCCGGCCCCCu -3'
miRNA:   3'- -CUUGGGCagauAGGGu--------GGUCGGGGGu -5'
6124 3' -59 NC_001826.1 + 87626 0.68 0.573732
Target:  5'- aGACCUGUCUGgcucggccUCCCugUcGCCCUCGc -3'
miRNA:   3'- cUUGGGCAGAU--------AGGGugGuCGGGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.