Results 1 - 20 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6130 | 5' | -49 | NC_001826.1 | + | 26396 | 1.11 | 0.007091 |
Target: 5'- aUCAGGAAAAAUAUGGGGCAGUAGGGAg -3' miRNA: 3'- -AGUCCUUUUUAUACCCCGUCAUCCCU- -5' |
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6130 | 5' | -49 | NC_001826.1 | + | 103955 | 0.76 | 0.72769 |
Target: 5'- cUCGGGGucuGUAgGGGGCucuGUAGGGGg -3' miRNA: 3'- -AGUCCUuuuUAUaCCCCGu--CAUCCCU- -5' |
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6130 | 5' | -49 | NC_001826.1 | + | 90171 | 0.76 | 0.72769 |
Target: 5'- gUCAGGAugGGccUGGGGUucgAGUAGGGGg -3' miRNA: 3'- -AGUCCUuuUUauACCCCG---UCAUCCCU- -5' |
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6130 | 5' | -49 | NC_001826.1 | + | 118578 | 0.74 | 0.798916 |
Target: 5'- gUCGGGGGAGug--GGGGCGGggAGGGc -3' miRNA: 3'- -AGUCCUUUUuauaCCCCGUCa-UCCCu -5' |
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6130 | 5' | -49 | NC_001826.1 | + | 104453 | 0.72 | 0.892419 |
Target: 5'- aUCuGGuGAug-GUGGGGCuGGUGGGGGg -3' miRNA: 3'- -AGuCCuUUuuaUACCCCG-UCAUCCCU- -5' |
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6130 | 5' | -49 | NC_001826.1 | + | 117185 | 0.72 | 0.906244 |
Target: 5'- gUCGGG-AGGAUGUGGgcguggacGGCGGUAGGaGGu -3' miRNA: 3'- -AGUCCuUUUUAUACC--------CCGUCAUCC-CU- -5' |
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6130 | 5' | -49 | NC_001826.1 | + | 69349 | 0.71 | 0.924939 |
Target: 5'- -gGGGAAcgGAggGUGGGGgAGUGGGuGAu -3' miRNA: 3'- agUCCUU--UUuaUACCCCgUCAUCC-CU- -5' |
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6130 | 5' | -49 | NC_001826.1 | + | 26709 | 0.71 | 0.930619 |
Target: 5'- aCAGGggGAAUAUguggagGGGGC-GUGGGu- -3' miRNA: 3'- aGUCCuuUUUAUA------CCCCGuCAUCCcu -5' |
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6130 | 5' | -49 | NC_001826.1 | + | 118891 | 0.7 | 0.946003 |
Target: 5'- cCGGGG---GUcgGGGGCGG-GGGGGc -3' miRNA: 3'- aGUCCUuuuUAuaCCCCGUCaUCCCU- -5' |
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6130 | 5' | -49 | NC_001826.1 | + | 28266 | 0.7 | 0.954901 |
Target: 5'- cUCGGGAGGGGgccGGGGaGGUcgGGGGAa -3' miRNA: 3'- -AGUCCUUUUUauaCCCCgUCA--UCCCU- -5' |
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6130 | 5' | -49 | NC_001826.1 | + | 118227 | 0.7 | 0.958954 |
Target: 5'- cUCGGGAGug----GGGGguGcUGGGGGg -3' miRNA: 3'- -AGUCCUUuuuauaCCCCguC-AUCCCU- -5' |
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6130 | 5' | -49 | NC_001826.1 | + | 27480 | 0.69 | 0.962749 |
Target: 5'- cUCGGGAGGGGgccGGGGaGGUcGGGGAu -3' miRNA: 3'- -AGUCCUUUUUauaCCCCgUCA-UCCCU- -5' |
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6130 | 5' | -49 | NC_001826.1 | + | 27160 | 0.69 | 0.962749 |
Target: 5'- cUCGGGAGGGGgccGGGGaGGUcGGGGAu -3' miRNA: 3'- -AGUCCUUUUUauaCCCCgUCA-UCCCU- -5' |
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6130 | 5' | -49 | NC_001826.1 | + | 27040 | 0.69 | 0.962749 |
Target: 5'- cUCGGGAGGGGgccGGGGaGGUcGGGGAu -3' miRNA: 3'- -AGUCCUUUUUauaCCCCgUCA-UCCCU- -5' |
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6130 | 5' | -49 | NC_001826.1 | + | 27400 | 0.69 | 0.962749 |
Target: 5'- cUCGGGAGGGGgccGGGGaGGUcGGGGAu -3' miRNA: 3'- -AGUCCUUUUUauaCCCCgUCA-UCCCU- -5' |
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6130 | 5' | -49 | NC_001826.1 | + | 26960 | 0.69 | 0.962749 |
Target: 5'- cUCGGGAGGGGgccGGGGaGGUcGGGGAu -3' miRNA: 3'- -AGUCCUUUUUauaCCCCgUCA-UCCCU- -5' |
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6130 | 5' | -49 | NC_001826.1 | + | 27080 | 0.69 | 0.962749 |
Target: 5'- cUCGGGAGGGGgccGGGGaGGUcGGGGAu -3' miRNA: 3'- -AGUCCUUUUUauaCCCCgUCA-UCCCU- -5' |
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6130 | 5' | -49 | NC_001826.1 | + | 27120 | 0.69 | 0.962749 |
Target: 5'- cUCGGGAGGGGgccGGGGaGGUcGGGGAu -3' miRNA: 3'- -AGUCCUUUUUauaCCCCgUCA-UCCCU- -5' |
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6130 | 5' | -49 | NC_001826.1 | + | 27200 | 0.69 | 0.962749 |
Target: 5'- cUCGGGAGGGGgccGGGGaGGUcGGGGAu -3' miRNA: 3'- -AGUCCUUUUUauaCCCCgUCA-UCCCU- -5' |
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6130 | 5' | -49 | NC_001826.1 | + | 27280 | 0.69 | 0.962749 |
Target: 5'- cUCGGGAGGGGgccGGGGaGGUcGGGGAu -3' miRNA: 3'- -AGUCCUUUUUauaCCCCgUCA-UCCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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