Results 1 - 20 of 56 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6130 | 5' | -49 | NC_001826.1 | + | 26396 | 1.11 | 0.007091 |
Target: 5'- aUCAGGAAAAAUAUGGGGCAGUAGGGAg -3' miRNA: 3'- -AGUCCUUUUUAUACCCCGUCAUCCCU- -5' |
|||||||
6130 | 5' | -49 | NC_001826.1 | + | 6618 | 0.66 | 0.99328 |
Target: 5'- cCAGGuaaag-GUGGaGG-AGUAGGGAa -3' miRNA: 3'- aGUCCuuuuuaUACC-CCgUCAUCCCU- -5' |
|||||||
6130 | 5' | -49 | NC_001826.1 | + | 10258 | 0.67 | 0.992212 |
Target: 5'- gCAGGAuaauAAUaaaGUGGGcuGgAGUGGGGAa -3' miRNA: 3'- aGUCCUuu--UUA---UACCC--CgUCAUCCCU- -5' |
|||||||
6130 | 5' | -49 | NC_001826.1 | + | 118580 | 0.67 | 0.98653 |
Target: 5'- gCAGGggGGA---GGGGCacGGUcagcGGGGAc -3' miRNA: 3'- aGUCCuuUUUauaCCCCG--UCA----UCCCU- -5' |
|||||||
6130 | 5' | -49 | NC_001826.1 | + | 35289 | 0.68 | 0.984706 |
Target: 5'- gCGGGAGAAGacacuGGUGGUGGGGAa -3' miRNA: 3'- aGUCCUUUUUauaccCCGUCAUCCCU- -5' |
|||||||
6130 | 5' | -49 | NC_001826.1 | + | 72593 | 0.68 | 0.9805 |
Target: 5'- cUAGGGAGGGgcgGGGGUuugggucaAGUGGGGu -3' miRNA: 3'- aGUCCUUUUUauaCCCCG--------UCAUCCCu -5' |
|||||||
6130 | 5' | -49 | NC_001826.1 | + | 118792 | 0.68 | 0.9805 |
Target: 5'- gCGGGGGAGGcuUGUGGGGgcccCGGgcccGGGGAg -3' miRNA: 3'- aGUCCUUUUU--AUACCCC----GUCa---UCCCU- -5' |
|||||||
6130 | 5' | -49 | NC_001826.1 | + | 47870 | 0.68 | 0.9805 |
Target: 5'- gUCAGGGAAucacccauGUGUGGGGCAGc----- -3' miRNA: 3'- -AGUCCUUUu-------UAUACCCCGUCaucccu -5' |
|||||||
6130 | 5' | -49 | NC_001826.1 | + | 115373 | 0.69 | 0.969592 |
Target: 5'- cCAGGGcuuuuGAAGUcUGGGGUGGguuUAGGGGc -3' miRNA: 3'- aGUCCU-----UUUUAuACCCCGUC---AUCCCU- -5' |
|||||||
6130 | 5' | -49 | NC_001826.1 | + | 103955 | 0.76 | 0.72769 |
Target: 5'- cUCGGGGucuGUAgGGGGCucuGUAGGGGg -3' miRNA: 3'- -AGUCCUuuuUAUaCCCCGu--CAUCCCU- -5' |
|||||||
6130 | 5' | -49 | NC_001826.1 | + | 104453 | 0.72 | 0.892419 |
Target: 5'- aUCuGGuGAug-GUGGGGCuGGUGGGGGg -3' miRNA: 3'- -AGuCCuUUuuaUACCCCG-UCAUCCCU- -5' |
|||||||
6130 | 5' | -49 | NC_001826.1 | + | 117185 | 0.72 | 0.906244 |
Target: 5'- gUCGGG-AGGAUGUGGgcguggacGGCGGUAGGaGGu -3' miRNA: 3'- -AGUCCuUUUUAUACC--------CCGUCAUCC-CU- -5' |
|||||||
6130 | 5' | -49 | NC_001826.1 | + | 118227 | 0.7 | 0.958954 |
Target: 5'- cUCGGGAGug----GGGGguGcUGGGGGg -3' miRNA: 3'- -AGUCCUUuuuauaCCCCguC-AUCCCU- -5' |
|||||||
6130 | 5' | -49 | NC_001826.1 | + | 4567 | 0.69 | 0.966293 |
Target: 5'- aUUGGGAAucuuuccuUGUGGGGguGUuGGGGc -3' miRNA: 3'- -AGUCCUUuuu-----AUACCCCguCAuCCCU- -5' |
|||||||
6130 | 5' | -49 | NC_001826.1 | + | 118546 | 0.69 | 0.969592 |
Target: 5'- cCGGGggGcg---GGGGUgucuAGUAGGGGg -3' miRNA: 3'- aGUCCuuUuuauaCCCCG----UCAUCCCU- -5' |
|||||||
6130 | 5' | -49 | NC_001826.1 | + | 90171 | 0.76 | 0.72769 |
Target: 5'- gUCAGGAugGGccUGGGGUucgAGUAGGGGg -3' miRNA: 3'- -AGUCCUuuUUauACCCCG---UCAUCCCU- -5' |
|||||||
6130 | 5' | -49 | NC_001826.1 | + | 28171 | 0.66 | 0.9958 |
Target: 5'- --cGGGAAGGUcgGGGGaaccggGGGGAu -3' miRNA: 3'- aguCCUUUUUAuaCCCCguca--UCCCU- -5' |
|||||||
6130 | 5' | -49 | NC_001826.1 | + | 119011 | 0.67 | 0.989673 |
Target: 5'- cCGGGG-----GUGGGG-GGUAGGGGc -3' miRNA: 3'- aGUCCUuuuuaUACCCCgUCAUCCCU- -5' |
|||||||
6130 | 5' | -49 | NC_001826.1 | + | 70094 | 0.68 | 0.982488 |
Target: 5'- cCGGGGu---UGUGGGGguGUcugguucgggaguAGGGGg -3' miRNA: 3'- aGUCCUuuuuAUACCCCguCA-------------UCCCU- -5' |
|||||||
6130 | 5' | -49 | NC_001826.1 | + | 118317 | 0.68 | 0.975487 |
Target: 5'- cCAGGG-----GUGGGG-GGUAGGGGc -3' miRNA: 3'- aGUCCUuuuuaUACCCCgUCAUCCCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home