miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6130 5' -49 NC_001826.1 + 4567 0.69 0.966293
Target:  5'- aUUGGGAAucuuuccuUGUGGGGguGUuGGGGc -3'
miRNA:   3'- -AGUCCUUuuu-----AUACCCCguCAuCCCU- -5'
6130 5' -49 NC_001826.1 + 6618 0.66 0.99328
Target:  5'- cCAGGuaaag-GUGGaGG-AGUAGGGAa -3'
miRNA:   3'- aGUCCuuuuuaUACC-CCgUCAUCCCU- -5'
6130 5' -49 NC_001826.1 + 10258 0.67 0.992212
Target:  5'- gCAGGAuaauAAUaaaGUGGGcuGgAGUGGGGAa -3'
miRNA:   3'- aGUCCUuu--UUA---UACCC--CgUCAUCCCU- -5'
6130 5' -49 NC_001826.1 + 26396 1.11 0.007091
Target:  5'- aUCAGGAAAAAUAUGGGGCAGUAGGGAg -3'
miRNA:   3'- -AGUCCUUUUUAUACCCCGUCAUCCCU- -5'
6130 5' -49 NC_001826.1 + 26709 0.71 0.930619
Target:  5'- aCAGGggGAAUAUguggagGGGGC-GUGGGu- -3'
miRNA:   3'- aGUCCuuUUUAUA------CCCCGuCAUCCcu -5'
6130 5' -49 NC_001826.1 + 26920 0.69 0.962749
Target:  5'- cUCGGGAGGGGgccGGGGaGGUcGGGGAu -3'
miRNA:   3'- -AGUCCUUUUUauaCCCCgUCA-UCCCU- -5'
6130 5' -49 NC_001826.1 + 26960 0.69 0.962749
Target:  5'- cUCGGGAGGGGgccGGGGaGGUcGGGGAu -3'
miRNA:   3'- -AGUCCUUUUUauaCCCCgUCA-UCCCU- -5'
6130 5' -49 NC_001826.1 + 27000 0.69 0.962749
Target:  5'- cUCGGGAGGGGgccGGGGaGGUcGGGGAu -3'
miRNA:   3'- -AGUCCUUUUUauaCCCCgUCA-UCCCU- -5'
6130 5' -49 NC_001826.1 + 27040 0.69 0.962749
Target:  5'- cUCGGGAGGGGgccGGGGaGGUcGGGGAu -3'
miRNA:   3'- -AGUCCUUUUUauaCCCCgUCA-UCCCU- -5'
6130 5' -49 NC_001826.1 + 27080 0.69 0.962749
Target:  5'- cUCGGGAGGGGgccGGGGaGGUcGGGGAu -3'
miRNA:   3'- -AGUCCUUUUUauaCCCCgUCA-UCCCU- -5'
6130 5' -49 NC_001826.1 + 27120 0.69 0.962749
Target:  5'- cUCGGGAGGGGgccGGGGaGGUcGGGGAu -3'
miRNA:   3'- -AGUCCUUUUUauaCCCCgUCA-UCCCU- -5'
6130 5' -49 NC_001826.1 + 27160 0.69 0.962749
Target:  5'- cUCGGGAGGGGgccGGGGaGGUcGGGGAu -3'
miRNA:   3'- -AGUCCUUUUUauaCCCCgUCA-UCCCU- -5'
6130 5' -49 NC_001826.1 + 27200 0.69 0.962749
Target:  5'- cUCGGGAGGGGgccGGGGaGGUcGGGGAu -3'
miRNA:   3'- -AGUCCUUUUUauaCCCCgUCA-UCCCU- -5'
6130 5' -49 NC_001826.1 + 27240 0.69 0.962749
Target:  5'- cUCGGGAGGGGgccGGGGaGGUcGGGGAu -3'
miRNA:   3'- -AGUCCUUUUUauaCCCCgUCA-UCCCU- -5'
6130 5' -49 NC_001826.1 + 27280 0.69 0.962749
Target:  5'- cUCGGGAGGGGgccGGGGaGGUcGGGGAu -3'
miRNA:   3'- -AGUCCUUUUUauaCCCCgUCA-UCCCU- -5'
6130 5' -49 NC_001826.1 + 27320 0.69 0.962749
Target:  5'- cUCGGGAGGGGgccGGGGaGGUcGGGGAu -3'
miRNA:   3'- -AGUCCUUUUUauaCCCCgUCA-UCCCU- -5'
6130 5' -49 NC_001826.1 + 27360 0.69 0.962749
Target:  5'- cUCGGGAGGGGgccGGGGaGGUcGGGGAu -3'
miRNA:   3'- -AGUCCUUUUUauaCCCCgUCA-UCCCU- -5'
6130 5' -49 NC_001826.1 + 27400 0.69 0.962749
Target:  5'- cUCGGGAGGGGgccGGGGaGGUcGGGGAu -3'
miRNA:   3'- -AGUCCUUUUUauaCCCCgUCA-UCCCU- -5'
6130 5' -49 NC_001826.1 + 27440 0.69 0.962749
Target:  5'- cUCGGGAGGGGgccGGGGaGGUcGGGGAu -3'
miRNA:   3'- -AGUCCUUUUUauaCCCCgUCA-UCCCU- -5'
6130 5' -49 NC_001826.1 + 27480 0.69 0.962749
Target:  5'- cUCGGGAGGGGgccGGGGaGGUcGGGGAu -3'
miRNA:   3'- -AGUCCUUUUUauaCCCCgUCA-UCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.