miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6132 3' -52.5 NC_001826.1 + 99045 0.66 0.960909
Target:  5'- gGUGcGGgUCCCCCGGCcuggGGAGCCggUCCc -3'
miRNA:   3'- -CAUuCUgAGGGGGUUG----UUUCGG--AGGu -5'
6132 3' -52.5 NC_001826.1 + 100144 0.66 0.960909
Target:  5'- gGUGcGGgUCCCCCGGCcuggGGAGCCggUCCc -3'
miRNA:   3'- -CAUuCUgAGGGGGUUG----UUUCGG--AGGu -5'
6132 3' -52.5 NC_001826.1 + 100244 0.66 0.960909
Target:  5'- gGUGcGGgUCCCCCGGCcuggGGAGCCggUCCc -3'
miRNA:   3'- -CAUuCUgAGGGGGUUG----UUUCGG--AGGu -5'
6132 3' -52.5 NC_001826.1 + 100344 0.66 0.960909
Target:  5'- gGUGcGGgUCCCCCGGCcuggGGAGCCggUCCc -3'
miRNA:   3'- -CAUuCUgAGGGGGUUG----UUUCGG--AGGu -5'
6132 3' -52.5 NC_001826.1 + 100444 0.66 0.960909
Target:  5'- gGUGcGGgUCCCCCGGCcuggGGAGCCggUCCc -3'
miRNA:   3'- -CAUuCUgAGGGGGUUG----UUUCGG--AGGu -5'
6132 3' -52.5 NC_001826.1 + 100544 0.66 0.960909
Target:  5'- gGUGcGGgUCCCCCGGCcuggGGAGCCggUCCc -3'
miRNA:   3'- -CAUuCUgAGGGGGUUG----UUUCGG--AGGu -5'
6132 3' -52.5 NC_001826.1 + 100644 0.66 0.960909
Target:  5'- gGUGcGGgUCCCCCGGCcuggGGAGCCggUCCc -3'
miRNA:   3'- -CAUuCUgAGGGGGUUG----UUUCGG--AGGu -5'
6132 3' -52.5 NC_001826.1 + 100744 0.66 0.960909
Target:  5'- gGUGcGGgUCCCCCGGCcuggGGAGCCggUCCc -3'
miRNA:   3'- -CAUuCUgAGGGGGUUG----UUUCGG--AGGu -5'
6132 3' -52.5 NC_001826.1 + 100843 0.66 0.960909
Target:  5'- gGUGcGGgUCCCCCGGCcuggGGAGCCggUCCc -3'
miRNA:   3'- -CAUuCUgAGGGGGUUG----UUUCGG--AGGu -5'
6132 3' -52.5 NC_001826.1 + 100044 0.66 0.960909
Target:  5'- gGUGcGGgUCCCCCGGCcuggGGAGCCggUCCc -3'
miRNA:   3'- -CAUuCUgAGGGGGUUG----UUUCGG--AGGu -5'
6132 3' -52.5 NC_001826.1 + 99944 0.66 0.960909
Target:  5'- gGUGcGGgUCCCCCGGCcuggGGAGCCggUCCc -3'
miRNA:   3'- -CAUuCUgAGGGGGUUG----UUUCGG--AGGu -5'
6132 3' -52.5 NC_001826.1 + 99145 0.66 0.960909
Target:  5'- gGUGcGGgUCCCCCGGCcuggGGAGCCggUCCc -3'
miRNA:   3'- -CAUuCUgAGGGGGUUG----UUUCGG--AGGu -5'
6132 3' -52.5 NC_001826.1 + 99245 0.66 0.960909
Target:  5'- gGUGcGGgUCCCCCGGCcuggGGAGCCggUCCc -3'
miRNA:   3'- -CAUuCUgAGGGGGUUG----UUUCGG--AGGu -5'
6132 3' -52.5 NC_001826.1 + 99345 0.66 0.960909
Target:  5'- gGUGcGGgUCCCCCGGCcuggGGAGCCggUCCc -3'
miRNA:   3'- -CAUuCUgAGGGGGUUG----UUUCGG--AGGu -5'
6132 3' -52.5 NC_001826.1 + 99445 0.66 0.960909
Target:  5'- gGUGcGGgUCCCCCGGCcuggGGAGCCggUCCc -3'
miRNA:   3'- -CAUuCUgAGGGGGUUG----UUUCGG--AGGu -5'
6132 3' -52.5 NC_001826.1 + 99545 0.66 0.960909
Target:  5'- gGUGcGGgUCCCCCGGCcuggGGAGCCggUCCc -3'
miRNA:   3'- -CAUuCUgAGGGGGUUG----UUUCGG--AGGu -5'
6132 3' -52.5 NC_001826.1 + 99645 0.66 0.960909
Target:  5'- gGUGcGGgUCCCCCGGCcuggGGAGCCggUCCc -3'
miRNA:   3'- -CAUuCUgAGGGGGUUG----UUUCGG--AGGu -5'
6132 3' -52.5 NC_001826.1 + 99745 0.66 0.960909
Target:  5'- gGUGcGGgUCCCCCGGCcuggGGAGCCggUCCc -3'
miRNA:   3'- -CAUuCUgAGGGGGUUG----UUUCGG--AGGu -5'
6132 3' -52.5 NC_001826.1 + 99844 0.66 0.960909
Target:  5'- gGUGcGGgUCCCCCGGCcuggGGAGCCggUCCc -3'
miRNA:   3'- -CAUuCUgAGGGGGUUG----UUUCGG--AGGu -5'
6132 3' -52.5 NC_001826.1 + 98945 0.66 0.960909
Target:  5'- gGUGcGGgUCCCCCGGCcuggGGAGCCggUCCc -3'
miRNA:   3'- -CAUuCUgAGGGGGUUG----UUUCGG--AGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.