miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6134 3' -57.4 NC_001826.1 + 10583 0.66 0.840392
Target:  5'- -cCAGGUUacaUGCCCCUAGAugGGa -3'
miRNA:   3'- ccGUCCAAgagGUGGGGGUCUugCCc -5'
6134 3' -57.4 NC_001826.1 + 118752 0.66 0.82382
Target:  5'- -cCGGGc---CCGCCCCCGGGgguCGGGg -3'
miRNA:   3'- ccGUCCaagaGGUGGGGGUCUu--GCCC- -5'
6134 3' -57.4 NC_001826.1 + 97215 0.67 0.788671
Target:  5'- uGCAGGUUUUCCaguugaGCCaCCuGAuCGGGg -3'
miRNA:   3'- cCGUCCAAGAGG------UGGgGGuCUuGCCC- -5'
6134 3' -57.4 NC_001826.1 + 53754 0.67 0.760818
Target:  5'- gGGCuggacuuucucaAGGuUUCUCCGCCCCCuccuGAcagGCcuGGGa -3'
miRNA:   3'- -CCG------------UCC-AAGAGGUGGGGGu---CU---UG--CCC- -5'
6134 3' -57.4 NC_001826.1 + 64622 0.67 0.760818
Target:  5'- cGGCcuGGUUCUcaCCACaaaCUUGGAugGGGa -3'
miRNA:   3'- -CCGu-CCAAGA--GGUGg--GGGUCUugCCC- -5'
6134 3' -57.4 NC_001826.1 + 118890 0.67 0.751296
Target:  5'- cGGCggAGGgggUCCAgCCCCCGGcAGgGGGg -3'
miRNA:   3'- -CCG--UCCaagAGGU-GGGGGUC-UUgCCC- -5'
6134 3' -57.4 NC_001826.1 + 99681 0.68 0.73195
Target:  5'- aGGCcgGGGgaC-CCGCaCCCCGGGcCGGGc -3'
miRNA:   3'- -CCG--UCCaaGaGGUG-GGGGUCUuGCCC- -5'
6134 3' -57.4 NC_001826.1 + 99781 0.68 0.73195
Target:  5'- aGGCcgGGGgaC-CCGCaCCCCGGGcCGGGc -3'
miRNA:   3'- -CCG--UCCaaGaGGUG-GGGGUCUuGCCC- -5'
6134 3' -57.4 NC_001826.1 + 99881 0.68 0.73195
Target:  5'- aGGCcgGGGgaC-CCGCaCCCCGGGcCGGGc -3'
miRNA:   3'- -CCG--UCCaaGaGGUG-GGGGUCUuGCCC- -5'
6134 3' -57.4 NC_001826.1 + 100281 0.68 0.73195
Target:  5'- aGGCcgGGGgaC-CCGCaCCCCGGGcCGGGc -3'
miRNA:   3'- -CCG--UCCaaGaGGUG-GGGGUCUuGCCC- -5'
6134 3' -57.4 NC_001826.1 + 99981 0.68 0.73195
Target:  5'- aGGCcgGGGgaC-CCGCaCCCCGGGcCGGGc -3'
miRNA:   3'- -CCG--UCCaaGaGGUG-GGGGUCUuGCCC- -5'
6134 3' -57.4 NC_001826.1 + 100081 0.68 0.73195
Target:  5'- aGGCcgGGGgaC-CCGCaCCCCGGGcCGGGc -3'
miRNA:   3'- -CCG--UCCaaGaGGUG-GGGGUCUuGCCC- -5'
6134 3' -57.4 NC_001826.1 + 99581 0.68 0.73195
Target:  5'- aGGCcgGGGgaC-CCGCaCCCCGGGcCGGGc -3'
miRNA:   3'- -CCG--UCCaaGaGGUG-GGGGUCUuGCCC- -5'
6134 3' -57.4 NC_001826.1 + 99482 0.68 0.73195
Target:  5'- aGGCcgGGGgaC-CCGCaCCCCGGGcCGGGc -3'
miRNA:   3'- -CCG--UCCaaGaGGUG-GGGGUCUuGCCC- -5'
6134 3' -57.4 NC_001826.1 + 99382 0.68 0.73195
Target:  5'- aGGCcgGGGgaC-CCGCaCCCCGGGcCGGGc -3'
miRNA:   3'- -CCG--UCCaaGaGGUG-GGGGUCUuGCCC- -5'
6134 3' -57.4 NC_001826.1 + 99282 0.68 0.73195
Target:  5'- aGGCcgGGGgaC-CCGCaCCCCGGGcCGGGc -3'
miRNA:   3'- -CCG--UCCaaGaGGUG-GGGGUCUuGCCC- -5'
6134 3' -57.4 NC_001826.1 + 99182 0.68 0.73195
Target:  5'- aGGCcgGGGgaC-CCGCaCCCCGGGcCGGGc -3'
miRNA:   3'- -CCG--UCCaaGaGGUG-GGGGUCUuGCCC- -5'
6134 3' -57.4 NC_001826.1 + 99082 0.68 0.73195
Target:  5'- aGGCcgGGGgaC-CCGCaCCCCGGGcCGGGc -3'
miRNA:   3'- -CCG--UCCaaGaGGUG-GGGGUCUuGCCC- -5'
6134 3' -57.4 NC_001826.1 + 100381 0.68 0.73195
Target:  5'- aGGCcgGGGgaC-CCGCaCCCCGGGcCGGGc -3'
miRNA:   3'- -CCG--UCCaaGaGGUG-GGGGUCUuGCCC- -5'
6134 3' -57.4 NC_001826.1 + 100181 0.68 0.73195
Target:  5'- aGGCcgGGGgaC-CCGCaCCCCGGGcCGGGc -3'
miRNA:   3'- -CCG--UCCaaGaGGUG-GGGGUCUuGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.