Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6137 | 5' | -58.5 | NC_001826.1 | + | 98641 | 0.66 | 0.733231 |
Target: 5'- cUGGGCAauuaugacauuucagUGgacagugUGGGGAGAucuuacauuaucaaaCUGuGCCCa -3' miRNA: 3'- -ACCCGU---------------ACa------ACCCCUCU---------------GACuCGGGc -5' |
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6137 | 5' | -58.5 | NC_001826.1 | + | 22881 | 0.67 | 0.685075 |
Target: 5'- cUGGGUcucuAUGUagUGGGGuaguGAUcagGAGCCCa -3' miRNA: 3'- -ACCCG----UACA--ACCCCu---CUGa--CUCGGGc -5' |
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6137 | 5' | -58.5 | NC_001826.1 | + | 118829 | 0.68 | 0.623552 |
Target: 5'- gGGGCcgGgcGGGGGGAgUGccccuCCCGg -3' miRNA: 3'- aCCCGuaCaaCCCCUCUgACuc---GGGC- -5' |
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6137 | 5' | -58.5 | NC_001826.1 | + | 100986 | 0.69 | 0.562242 |
Target: 5'- aUGGGgGgaaccGGGGGGACgGGGCCCc -3' miRNA: 3'- -ACCCgUacaa-CCCCUCUGaCUCGGGc -5' |
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6137 | 5' | -58.5 | NC_001826.1 | + | 100087 | 0.69 | 0.562242 |
Target: 5'- aUGGGgGgaaccGGGGGGACgGGGCCCc -3' miRNA: 3'- -ACCCgUacaa-CCCCUCUGaCUCGGGc -5' |
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6137 | 5' | -58.5 | NC_001826.1 | + | 100187 | 0.69 | 0.562242 |
Target: 5'- aUGGGgGgaaccGGGGGGACgGGGCCCc -3' miRNA: 3'- -ACCCgUacaa-CCCCUCUGaCUCGGGc -5' |
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6137 | 5' | -58.5 | NC_001826.1 | + | 100287 | 0.69 | 0.562242 |
Target: 5'- aUGGGgGgaaccGGGGGGACgGGGCCCc -3' miRNA: 3'- -ACCCgUacaa-CCCCUCUGaCUCGGGc -5' |
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6137 | 5' | -58.5 | NC_001826.1 | + | 100387 | 0.69 | 0.562242 |
Target: 5'- aUGGGgGgaaccGGGGGGACgGGGCCCc -3' miRNA: 3'- -ACCCgUacaa-CCCCUCUGaCUCGGGc -5' |
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6137 | 5' | -58.5 | NC_001826.1 | + | 100487 | 0.69 | 0.562242 |
Target: 5'- aUGGGgGgaaccGGGGGGACgGGGCCCc -3' miRNA: 3'- -ACCCgUacaa-CCCCUCUGaCUCGGGc -5' |
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6137 | 5' | -58.5 | NC_001826.1 | + | 100587 | 0.69 | 0.562242 |
Target: 5'- aUGGGgGgaaccGGGGGGACgGGGCCCc -3' miRNA: 3'- -ACCCgUacaa-CCCCUCUGaCUCGGGc -5' |
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6137 | 5' | -58.5 | NC_001826.1 | + | 100687 | 0.69 | 0.562242 |
Target: 5'- aUGGGgGgaaccGGGGGGACgGGGCCCc -3' miRNA: 3'- -ACCCgUacaa-CCCCUCUGaCUCGGGc -5' |
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6137 | 5' | -58.5 | NC_001826.1 | + | 99987 | 0.69 | 0.562242 |
Target: 5'- aUGGGgGgaaccGGGGGGACgGGGCCCc -3' miRNA: 3'- -ACCCgUacaa-CCCCUCUGaCUCGGGc -5' |
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6137 | 5' | -58.5 | NC_001826.1 | + | 99887 | 0.69 | 0.562242 |
Target: 5'- aUGGGgGgaaccGGGGGGACgGGGCCCc -3' miRNA: 3'- -ACCCgUacaa-CCCCUCUGaCUCGGGc -5' |
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6137 | 5' | -58.5 | NC_001826.1 | + | 99688 | 0.69 | 0.562242 |
Target: 5'- aUGGGgGgaaccGGGGGGACgGGGCCCc -3' miRNA: 3'- -ACCCgUacaa-CCCCUCUGaCUCGGGc -5' |
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6137 | 5' | -58.5 | NC_001826.1 | + | 99588 | 0.69 | 0.562242 |
Target: 5'- aUGGGgGgaaccGGGGGGACgGGGCCCc -3' miRNA: 3'- -ACCCgUacaa-CCCCUCUGaCUCGGGc -5' |
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6137 | 5' | -58.5 | NC_001826.1 | + | 99488 | 0.69 | 0.562242 |
Target: 5'- aUGGGgGgaaccGGGGGGACgGGGCCCc -3' miRNA: 3'- -ACCCgUacaa-CCCCUCUGaCUCGGGc -5' |
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6137 | 5' | -58.5 | NC_001826.1 | + | 99288 | 0.69 | 0.562242 |
Target: 5'- aUGGGgGgaaccGGGGGGACgGGGCCCc -3' miRNA: 3'- -ACCCgUacaa-CCCCUCUGaCUCGGGc -5' |
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6137 | 5' | -58.5 | NC_001826.1 | + | 99188 | 0.69 | 0.562242 |
Target: 5'- aUGGGgGgaaccGGGGGGACgGGGCCCc -3' miRNA: 3'- -ACCCgUacaa-CCCCUCUGaCUCGGGc -5' |
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6137 | 5' | -58.5 | NC_001826.1 | + | 99088 | 0.69 | 0.562242 |
Target: 5'- aUGGGgGgaaccGGGGGGACgGGGCCCc -3' miRNA: 3'- -ACCCgUacaa-CCCCUCUGaCUCGGGc -5' |
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6137 | 5' | -58.5 | NC_001826.1 | + | 100886 | 0.69 | 0.562242 |
Target: 5'- aUGGGgGgaaccGGGGGGACgGGGCCCc -3' miRNA: 3'- -ACCCgUacaa-CCCCUCUGaCUCGGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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