miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6137 5' -58.5 NC_001826.1 + 22881 0.67 0.685075
Target:  5'- cUGGGUcucuAUGUagUGGGGuaguGAUcagGAGCCCa -3'
miRNA:   3'- -ACCCG----UACA--ACCCCu---CUGa--CUCGGGc -5'
6137 5' -58.5 NC_001826.1 + 28298 0.69 0.572377
Target:  5'- aGGGCcgGgaaggUGGGGGaACcGGGCCCc -3'
miRNA:   3'- aCCCGuaCa----ACCCCUcUGaCUCGGGc -5'
6137 5' -58.5 NC_001826.1 + 69761 1.09 0.001223
Target:  5'- cUGGGCAUGUUGGGGAGACUGAGCCCGa -3'
miRNA:   3'- -ACCCGUACAACCCCUCUGACUCGGGC- -5'
6137 5' -58.5 NC_001826.1 + 87669 0.7 0.493001
Target:  5'- -cGGCAgccagGUUGGGGAGGgUGAcGCuuGg -3'
miRNA:   3'- acCCGUa----CAACCCCUCUgACU-CGggC- -5'
6137 5' -58.5 NC_001826.1 + 97354 0.75 0.266904
Target:  5'- aGGGCAgccagUGGGGGGAucuggacuCUGGGCCCc -3'
miRNA:   3'- aCCCGUaca--ACCCCUCU--------GACUCGGGc -5'
6137 5' -58.5 NC_001826.1 + 98641 0.66 0.733231
Target:  5'- cUGGGCAauuaugacauuucagUGgacagugUGGGGAGAucuuacauuaucaaaCUGuGCCCa -3'
miRNA:   3'- -ACCCGU---------------ACa------ACCCCUCU---------------GACuCGGGc -5'
6137 5' -58.5 NC_001826.1 + 98879 0.71 0.436925
Target:  5'- uUGGGCGggaUGgggggaaccGGGGGGACgGGGCCCc -3'
miRNA:   3'- -ACCCGU---ACaa-------CCCCUCUGaCUCGGGc -5'
6137 5' -58.5 NC_001826.1 + 98988 0.69 0.562242
Target:  5'- aUGGGgGgaaccGGGGGGACgGGGCCCc -3'
miRNA:   3'- -ACCCgUacaa-CCCCUCUGaCUCGGGc -5'
6137 5' -58.5 NC_001826.1 + 99088 0.69 0.562242
Target:  5'- aUGGGgGgaaccGGGGGGACgGGGCCCc -3'
miRNA:   3'- -ACCCgUacaa-CCCCUCUGaCUCGGGc -5'
6137 5' -58.5 NC_001826.1 + 99188 0.69 0.562242
Target:  5'- aUGGGgGgaaccGGGGGGACgGGGCCCc -3'
miRNA:   3'- -ACCCgUacaa-CCCCUCUGaCUCGGGc -5'
6137 5' -58.5 NC_001826.1 + 99288 0.69 0.562242
Target:  5'- aUGGGgGgaaccGGGGGGACgGGGCCCc -3'
miRNA:   3'- -ACCCgUacaa-CCCCUCUGaCUCGGGc -5'
6137 5' -58.5 NC_001826.1 + 99388 0.69 0.562242
Target:  5'- aUGGGgGgaaccGGGGGGACgGGGCCCc -3'
miRNA:   3'- -ACCCgUacaa-CCCCUCUGaCUCGGGc -5'
6137 5' -58.5 NC_001826.1 + 99488 0.69 0.562242
Target:  5'- aUGGGgGgaaccGGGGGGACgGGGCCCc -3'
miRNA:   3'- -ACCCgUacaa-CCCCUCUGaCUCGGGc -5'
6137 5' -58.5 NC_001826.1 + 99588 0.69 0.562242
Target:  5'- aUGGGgGgaaccGGGGGGACgGGGCCCc -3'
miRNA:   3'- -ACCCgUacaa-CCCCUCUGaCUCGGGc -5'
6137 5' -58.5 NC_001826.1 + 99688 0.69 0.562242
Target:  5'- aUGGGgGgaaccGGGGGGACgGGGCCCc -3'
miRNA:   3'- -ACCCgUacaa-CCCCUCUGaCUCGGGc -5'
6137 5' -58.5 NC_001826.1 + 99887 0.69 0.562242
Target:  5'- aUGGGgGgaaccGGGGGGACgGGGCCCc -3'
miRNA:   3'- -ACCCgUacaa-CCCCUCUGaCUCGGGc -5'
6137 5' -58.5 NC_001826.1 + 99987 0.69 0.562242
Target:  5'- aUGGGgGgaaccGGGGGGACgGGGCCCc -3'
miRNA:   3'- -ACCCgUacaa-CCCCUCUGaCUCGGGc -5'
6137 5' -58.5 NC_001826.1 + 100087 0.69 0.562242
Target:  5'- aUGGGgGgaaccGGGGGGACgGGGCCCc -3'
miRNA:   3'- -ACCCgUacaa-CCCCUCUGaCUCGGGc -5'
6137 5' -58.5 NC_001826.1 + 100187 0.69 0.562242
Target:  5'- aUGGGgGgaaccGGGGGGACgGGGCCCc -3'
miRNA:   3'- -ACCCgUacaa-CCCCUCUGaCUCGGGc -5'
6137 5' -58.5 NC_001826.1 + 100287 0.69 0.562242
Target:  5'- aUGGGgGgaaccGGGGGGACgGGGCCCc -3'
miRNA:   3'- -ACCCgUacaa-CCCCUCUGaCUCGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.