Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6137 | 5' | -58.5 | NC_001826.1 | + | 69761 | 1.09 | 0.001223 |
Target: 5'- cUGGGCAUGUUGGGGAGACUGAGCCCGa -3' miRNA: 3'- -ACCCGUACAACCCCUCUGACUCGGGC- -5' |
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6137 | 5' | -58.5 | NC_001826.1 | + | 97354 | 0.75 | 0.266904 |
Target: 5'- aGGGCAgccagUGGGGGGAucuggacuCUGGGCCCc -3' miRNA: 3'- aCCCGUaca--ACCCCUCU--------GACUCGGGc -5' |
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6137 | 5' | -58.5 | NC_001826.1 | + | 119074 | 0.75 | 0.266904 |
Target: 5'- cGGGCcgGggcGGGGGGAaccgGGGCCCGc -3' miRNA: 3'- aCCCGuaCaa-CCCCUCUga--CUCGGGC- -5' |
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6137 | 5' | -58.5 | NC_001826.1 | + | 98879 | 0.71 | 0.436925 |
Target: 5'- uUGGGCGggaUGgggggaaccGGGGGGACgGGGCCCc -3' miRNA: 3'- -ACCCGU---ACaa-------CCCCUCUGaCUCGGGc -5' |
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6137 | 5' | -58.5 | NC_001826.1 | + | 118315 | 0.71 | 0.436925 |
Target: 5'- aGGG-GUGggGGGuaGGGGCUGGGCCCc -3' miRNA: 3'- aCCCgUACaaCCC--CUCUGACUCGGGc -5' |
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6137 | 5' | -58.5 | NC_001826.1 | + | 118785 | 0.7 | 0.493001 |
Target: 5'- cGGGgAcGcgGGGGAGGCUugugggggccccGGGCCCGg -3' miRNA: 3'- aCCCgUaCaaCCCCUCUGA------------CUCGGGC- -5' |
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6137 | 5' | -58.5 | NC_001826.1 | + | 87669 | 0.7 | 0.493001 |
Target: 5'- -cGGCAgccagGUUGGGGAGGgUGAcGCuuGg -3' miRNA: 3'- acCCGUa----CAACCCCUCUgACU-CGggC- -5' |
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6137 | 5' | -58.5 | NC_001826.1 | + | 100187 | 0.69 | 0.562242 |
Target: 5'- aUGGGgGgaaccGGGGGGACgGGGCCCc -3' miRNA: 3'- -ACCCgUacaa-CCCCUCUGaCUCGGGc -5' |
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6137 | 5' | -58.5 | NC_001826.1 | + | 100387 | 0.69 | 0.562242 |
Target: 5'- aUGGGgGgaaccGGGGGGACgGGGCCCc -3' miRNA: 3'- -ACCCgUacaa-CCCCUCUGaCUCGGGc -5' |
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6137 | 5' | -58.5 | NC_001826.1 | + | 100487 | 0.69 | 0.562242 |
Target: 5'- aUGGGgGgaaccGGGGGGACgGGGCCCc -3' miRNA: 3'- -ACCCgUacaa-CCCCUCUGaCUCGGGc -5' |
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6137 | 5' | -58.5 | NC_001826.1 | + | 100587 | 0.69 | 0.562242 |
Target: 5'- aUGGGgGgaaccGGGGGGACgGGGCCCc -3' miRNA: 3'- -ACCCgUacaa-CCCCUCUGaCUCGGGc -5' |
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6137 | 5' | -58.5 | NC_001826.1 | + | 100687 | 0.69 | 0.562242 |
Target: 5'- aUGGGgGgaaccGGGGGGACgGGGCCCc -3' miRNA: 3'- -ACCCgUacaa-CCCCUCUGaCUCGGGc -5' |
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6137 | 5' | -58.5 | NC_001826.1 | + | 100087 | 0.69 | 0.562242 |
Target: 5'- aUGGGgGgaaccGGGGGGACgGGGCCCc -3' miRNA: 3'- -ACCCgUacaa-CCCCUCUGaCUCGGGc -5' |
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6137 | 5' | -58.5 | NC_001826.1 | + | 99987 | 0.69 | 0.562242 |
Target: 5'- aUGGGgGgaaccGGGGGGACgGGGCCCc -3' miRNA: 3'- -ACCCgUacaa-CCCCUCUGaCUCGGGc -5' |
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6137 | 5' | -58.5 | NC_001826.1 | + | 99887 | 0.69 | 0.562242 |
Target: 5'- aUGGGgGgaaccGGGGGGACgGGGCCCc -3' miRNA: 3'- -ACCCgUacaa-CCCCUCUGaCUCGGGc -5' |
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6137 | 5' | -58.5 | NC_001826.1 | + | 99688 | 0.69 | 0.562242 |
Target: 5'- aUGGGgGgaaccGGGGGGACgGGGCCCc -3' miRNA: 3'- -ACCCgUacaa-CCCCUCUGaCUCGGGc -5' |
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6137 | 5' | -58.5 | NC_001826.1 | + | 99588 | 0.69 | 0.562242 |
Target: 5'- aUGGGgGgaaccGGGGGGACgGGGCCCc -3' miRNA: 3'- -ACCCgUacaa-CCCCUCUGaCUCGGGc -5' |
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6137 | 5' | -58.5 | NC_001826.1 | + | 99488 | 0.69 | 0.562242 |
Target: 5'- aUGGGgGgaaccGGGGGGACgGGGCCCc -3' miRNA: 3'- -ACCCgUacaa-CCCCUCUGaCUCGGGc -5' |
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6137 | 5' | -58.5 | NC_001826.1 | + | 99288 | 0.69 | 0.562242 |
Target: 5'- aUGGGgGgaaccGGGGGGACgGGGCCCc -3' miRNA: 3'- -ACCCgUacaa-CCCCUCUGaCUCGGGc -5' |
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6137 | 5' | -58.5 | NC_001826.1 | + | 99188 | 0.69 | 0.562242 |
Target: 5'- aUGGGgGgaaccGGGGGGACgGGGCCCc -3' miRNA: 3'- -ACCCgUacaa-CCCCUCUGaCUCGGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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