miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6139 3' -48.3 NC_001826.1 + 15316 0.66 0.998082
Target:  5'- --uAAGGGcuuugacACAGCacauGGugAUUCCUCUa -3'
miRNA:   3'- uauUUCCCu------UGUCG----UCugUAAGGAGG- -5'
6139 3' -48.3 NC_001826.1 + 114284 0.66 0.99769
Target:  5'- -cGAGGGGggUAGCGacACAUUCagCCa -3'
miRNA:   3'- uaUUUCCCuuGUCGUc-UGUAAGgaGG- -5'
6139 3' -48.3 NC_001826.1 + 118824 0.67 0.99266
Target:  5'- -gGAGGGGGGCcgGGCGGGgGgagugccCCUCCc -3'
miRNA:   3'- uaUUUCCCUUG--UCGUCUgUaa-----GGAGG- -5'
6139 3' -48.3 NC_001826.1 + 13549 0.68 0.990211
Target:  5'- cAUGuAGGGAcCGGCAGugAUggggUUCUCUg -3'
miRNA:   3'- -UAUuUCCCUuGUCGUCugUA----AGGAGG- -5'
6139 3' -48.3 NC_001826.1 + 97531 0.68 0.987164
Target:  5'- -aGAAGGGAAacgagAGUAGGCAcggUCCUUg -3'
miRNA:   3'- uaUUUCCCUUg----UCGUCUGUa--AGGAGg -5'
6139 3' -48.3 NC_001826.1 + 11359 0.68 0.987164
Target:  5'- --cAAGaGGAGCcugggAGCAGACAUUgguugUCUCCa -3'
miRNA:   3'- uauUUC-CCUUG-----UCGUCUGUAA-----GGAGG- -5'
6139 3' -48.3 NC_001826.1 + 26599 0.68 0.987164
Target:  5'- gAUAAGGGGAuuuccaGGUAGAgGgUCUUCCu -3'
miRNA:   3'- -UAUUUCCCUug----UCGUCUgUaAGGAGG- -5'
6139 3' -48.3 NC_001826.1 + 116294 0.68 0.986121
Target:  5'- --uAGGGGAGCacccccugagcgccgGGCAGAUuuuuaCCUCCa -3'
miRNA:   3'- uauUUCCCUUG---------------UCGUCUGuaa--GGAGG- -5'
6139 3' -48.3 NC_001826.1 + 99287 0.68 0.983434
Target:  5'- gAUGGGGGGAACcgGGgGGACGgggCC-CCg -3'
miRNA:   3'- -UAUUUCCCUUG--UCgUCUGUaa-GGaGG- -5'
6139 3' -48.3 NC_001826.1 + 99886 0.68 0.983434
Target:  5'- gAUGGGGGGAACcgGGgGGACGgggCC-CCg -3'
miRNA:   3'- -UAUUUCCCUUG--UCgUCUGUaa-GGaGG- -5'
6139 3' -48.3 NC_001826.1 + 99187 0.68 0.983434
Target:  5'- gAUGGGGGGAACcgGGgGGACGgggCC-CCg -3'
miRNA:   3'- -UAUUUCCCUUG--UCgUCUGUaa-GGaGG- -5'
6139 3' -48.3 NC_001826.1 + 99087 0.68 0.983434
Target:  5'- gAUGGGGGGAACcgGGgGGACGgggCC-CCg -3'
miRNA:   3'- -UAUUUCCCUUG--UCgUCUGUaa-GGaGG- -5'
6139 3' -48.3 NC_001826.1 + 98987 0.68 0.983434
Target:  5'- gAUGGGGGGAACcgGGgGGACGgggCC-CCg -3'
miRNA:   3'- -UAUUUCCCUUG--UCgUCUGUaa-GGaGG- -5'
6139 3' -48.3 NC_001826.1 + 98887 0.68 0.983434
Target:  5'- gAUGGGGGGAACcgGGgGGACGgggCC-CCg -3'
miRNA:   3'- -UAUUUCCCUUG--UCgUCUGUaa-GGaGG- -5'
6139 3' -48.3 NC_001826.1 + 100885 0.68 0.983434
Target:  5'- gAUGGGGGGAACcgGGgGGACGgggCC-CCg -3'
miRNA:   3'- -UAUUUCCCUUG--UCgUCUGUaa-GGaGG- -5'
6139 3' -48.3 NC_001826.1 + 100686 0.68 0.983434
Target:  5'- gAUGGGGGGAACcgGGgGGACGgggCC-CCg -3'
miRNA:   3'- -UAUUUCCCUUG--UCgUCUGUaa-GGaGG- -5'
6139 3' -48.3 NC_001826.1 + 100486 0.68 0.983434
Target:  5'- gAUGGGGGGAACcgGGgGGACGgggCC-CCg -3'
miRNA:   3'- -UAUUUCCCUUG--UCgUCUGUaa-GGaGG- -5'
6139 3' -48.3 NC_001826.1 + 100286 0.68 0.983434
Target:  5'- gAUGGGGGGAACcgGGgGGACGgggCC-CCg -3'
miRNA:   3'- -UAUUUCCCUUG--UCgUCUGUaa-GGaGG- -5'
6139 3' -48.3 NC_001826.1 + 100186 0.68 0.983434
Target:  5'- gAUGGGGGGAACcgGGgGGACGgggCC-CCg -3'
miRNA:   3'- -UAUUUCCCUUG--UCgUCUGUaa-GGaGG- -5'
6139 3' -48.3 NC_001826.1 + 99986 0.68 0.983434
Target:  5'- gAUGGGGGGAACcgGGgGGACGgggCC-CCg -3'
miRNA:   3'- -UAUUUCCCUUG--UCgUCUGUaa-GGaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.