Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6139 | 3' | -48.3 | NC_001826.1 | + | 119104 | 0.71 | 0.930265 |
Target: 5'- -cAGGGGGGACcccugGGCAGGCAggcaccaacagcggcCCUCCg -3' miRNA: 3'- uaUUUCCCUUG-----UCGUCUGUaa-------------GGAGG- -5' |
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6139 | 3' | -48.3 | NC_001826.1 | + | 119006 | 0.71 | 0.942415 |
Target: 5'- gGUGGGGGGuAGgGGCAGGgGUccCCUCCc -3' miRNA: 3'- -UAUUUCCC-UUgUCGUCUgUAa-GGAGG- -5' |
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6139 | 3' | -48.3 | NC_001826.1 | + | 118915 | 0.71 | 0.937314 |
Target: 5'- -aGGGGGGcGCGGCGGGCcccgGUUCCcCCc -3' miRNA: 3'- uaUUUCCCuUGUCGUCUG----UAAGGaGG- -5' |
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6139 | 3' | -48.3 | NC_001826.1 | + | 118824 | 0.67 | 0.99266 |
Target: 5'- -gGAGGGGGGCcgGGCGGGgGgagugccCCUCCc -3' miRNA: 3'- uaUUUCCCUUG--UCGUCUgUaa-----GGAGG- -5' |
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6139 | 3' | -48.3 | NC_001826.1 | + | 116294 | 0.68 | 0.986121 |
Target: 5'- --uAGGGGAGCacccccugagcgccgGGCAGAUuuuuaCCUCCa -3' miRNA: 3'- uauUUCCCUUG---------------UCGUCUGuaa--GGAGG- -5' |
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6139 | 3' | -48.3 | NC_001826.1 | + | 114284 | 0.66 | 0.99769 |
Target: 5'- -cGAGGGGggUAGCGacACAUUCagCCa -3' miRNA: 3'- uaUUUCCCuuGUCGUc-UGUAAGgaGG- -5' |
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6139 | 3' | -48.3 | NC_001826.1 | + | 100985 | 0.68 | 0.983434 |
Target: 5'- gAUGGGGGGAACcgGGgGGACGgggCC-CCg -3' miRNA: 3'- -UAUUUCCCUUG--UCgUCUGUaa-GGaGG- -5' |
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6139 | 3' | -48.3 | NC_001826.1 | + | 100885 | 0.68 | 0.983434 |
Target: 5'- gAUGGGGGGAACcgGGgGGACGgggCC-CCg -3' miRNA: 3'- -UAUUUCCCUUG--UCgUCUGUaa-GGaGG- -5' |
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6139 | 3' | -48.3 | NC_001826.1 | + | 100786 | 0.69 | 0.973591 |
Target: 5'- gAUGGGGGGAAcCGGgGGACGgggCC-CCg -3' miRNA: 3'- -UAUUUCCCUU-GUCgUCUGUaa-GGaGG- -5' |
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6139 | 3' | -48.3 | NC_001826.1 | + | 100686 | 0.68 | 0.983434 |
Target: 5'- gAUGGGGGGAACcgGGgGGACGgggCC-CCg -3' miRNA: 3'- -UAUUUCCCUUG--UCgUCUGUaa-GGaGG- -5' |
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6139 | 3' | -48.3 | NC_001826.1 | + | 100586 | 0.68 | 0.983434 |
Target: 5'- gAUGGGGGGAACcgGGgGGACGgggCC-CCg -3' miRNA: 3'- -UAUUUCCCUUG--UCgUCUGUaa-GGaGG- -5' |
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6139 | 3' | -48.3 | NC_001826.1 | + | 100486 | 0.68 | 0.983434 |
Target: 5'- gAUGGGGGGAACcgGGgGGACGgggCC-CCg -3' miRNA: 3'- -UAUUUCCCUUG--UCgUCUGUaa-GGaGG- -5' |
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6139 | 3' | -48.3 | NC_001826.1 | + | 100386 | 0.68 | 0.983434 |
Target: 5'- gAUGGGGGGAACcgGGgGGACGgggCC-CCg -3' miRNA: 3'- -UAUUUCCCUUG--UCgUCUGUaa-GGaGG- -5' |
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6139 | 3' | -48.3 | NC_001826.1 | + | 100286 | 0.68 | 0.983434 |
Target: 5'- gAUGGGGGGAACcgGGgGGACGgggCC-CCg -3' miRNA: 3'- -UAUUUCCCUUG--UCgUCUGUaa-GGaGG- -5' |
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6139 | 3' | -48.3 | NC_001826.1 | + | 100186 | 0.68 | 0.983434 |
Target: 5'- gAUGGGGGGAACcgGGgGGACGgggCC-CCg -3' miRNA: 3'- -UAUUUCCCUUG--UCgUCUGUaa-GGaGG- -5' |
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6139 | 3' | -48.3 | NC_001826.1 | + | 100086 | 0.68 | 0.983434 |
Target: 5'- gAUGGGGGGAACcgGGgGGACGgggCC-CCg -3' miRNA: 3'- -UAUUUCCCUUG--UCgUCUGUaa-GGaGG- -5' |
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6139 | 3' | -48.3 | NC_001826.1 | + | 99986 | 0.68 | 0.983434 |
Target: 5'- gAUGGGGGGAACcgGGgGGACGgggCC-CCg -3' miRNA: 3'- -UAUUUCCCUUG--UCgUCUGUaa-GGaGG- -5' |
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6139 | 3' | -48.3 | NC_001826.1 | + | 99886 | 0.68 | 0.983434 |
Target: 5'- gAUGGGGGGAACcgGGgGGACGgggCC-CCg -3' miRNA: 3'- -UAUUUCCCUUG--UCgUCUGUaa-GGaGG- -5' |
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6139 | 3' | -48.3 | NC_001826.1 | + | 99787 | 0.69 | 0.973591 |
Target: 5'- gAUGGGGGGAAcCGGgGGACGgggCC-CCg -3' miRNA: 3'- -UAUUUCCCUU-GUCgUCUGUaa-GGaGG- -5' |
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6139 | 3' | -48.3 | NC_001826.1 | + | 99687 | 0.68 | 0.983434 |
Target: 5'- gAUGGGGGGAACcgGGgGGACGgggCC-CCg -3' miRNA: 3'- -UAUUUCCCUUG--UCgUCUGUaa-GGaGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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